Job Description P77215 Confidence 100.00% Date Thu Jan 5 12:26:27 GMT 2012 Rank 12 Aligned Residues 364 % Identity 23% Template c3h12B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:mandelate racemase; PDBTitle: crystal structure of putative mandelate racemase from bordetella2 bronchiseptica rb50 Resolution 1.50 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	K	Q	V	R	A	W	F	T	G	G	A	T	A	E	K	G	A	G	G	G	D	Y	H	D	Q	G	A	N	H	W	I	D	D	H	I	A	T	P	M	S	K	Y	R	D	Y	E	Q	S	R	Q	S	F	G	I	N	V	L	G	T	L	V	V	E	V	E	A	E	N	G	Q	T	G	F	A	V	S	T	A
Query Conservation
Alig confidence																					.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	T	E	V	K	A	H	A	L	S	T	P	I	P	E	R	M	R	.	.	.	.	.	V	E	S	G	A	G	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	N	R	Q	M	I	L	V	E	V	R	T	D	E	G	V	T	G	V	G	S	P	S	G
Template Known Secondary structure																	G	G	G		.	.	.	.	.				T	T			B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T	S									S
Template Predicted Secondary structure																					.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.						.	.	.	.	.	.	.	30																									.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.
					85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure		.	.	.																																								.
Query SS confidence		.	.	.																																								.
Query Sequence		.	.	.	G	E	M	G	C	F	I	V	E	K	H	L	N	R	F	I	E	G	K	C	V	S	D	I	K	L	I	H	D	Q	M	L	S	A	T	L	Y	Y	S	.	G	S	G	G	L	V	M	N	T	I	S	C	V	D	L	A	L	W	D	L	F	G	K	V	V	G	L	P	V	Y	K	L	L	G	G	A	V
Query Conservation		.	.	.																																								.
Alig confidence		.	.	.																																								.
Template Conservation
Template Sequence		P	Y	D	L	A	V	L	K	R	A	I	E	D	V	I	G	P	Q	L	I	G	E	D	P	A	N	I	N	Y	L	W	H	K	V	F	H	G	E	V	S	R	N	L	G	H	R	S	V	G	I	A	A	M	S	G	V	D	I	A	L	W	D	L	K	G	R	A	M	N	Q	P	I	Y	Q	L	L	G	G	K	F
Template Known Secondary structure		S	S												T	T					T	T	S		T	T													T							S	S	S																						T	S	B					T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		161	.	.		.	.	.	.	.	.	170	.					.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure					.									.	.	.	.
Query SS confidence					.									.	.	.	.
Query Sequence		R	D	E	.	I	Q	F	Y	A	T	G	A	.	.	.	.	R	P	D	L	A	K	E	M	G	F	I	G	G	K	M	P	T	H	W	G	P	H	D	G	D	A	G	I	R	K	D	A	A	M	V	A	D	M	R	E	K	C	G	E	D	F	W	L	M	L	D	C	W	M	S	Q	D	V	N	Y	A	T	K	L
Query Conservation					.									.	.	.	.
Alig confidence					.									.	.	.	.
Template Conservation
Template Sequence		H	T	R	G	V	R	A	Y	A	S	S	I	Y	W	D	L	T	P	D	Q	A	A	D	E	L	A	G	W	V	E	Q	G	F	T	A	A	K	L	K	V	G	R	A	P	R	K	D	A	A	N	L	R	A	M	R	Q	R	V	G	A	D	V	E	I	L	V	D	A	N	Q	S	L	G	R	H	D	A	L	A	M
Template Known Secondary structure			S	S											S	S																	T		S							S	S																		S	S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		A	H	A	C	A	P	Y	N	L	K	W	I	E	E	C	L	P	P	Q	Q	Y	E	S	Y	R	E	L	K	R	N	A	P	V	G	M	M	V	T	S	G	E	H	H	G	T	L	Q	S	F	R	T	L	S	E	.	T	G	I	D	I	M	Q	P	D	V	G	W	C	G	G	L	T	T	L	V	E	I	A	A	I
Query Conservation																																																								.
Alig confidence																																	.																							.
Template Conservation																																	.
Template Sequence		L	R	I	L	D	E	A	G	C	Y	W	F	E	E	P	L	S	I	D	D	I	E	G	H	R	I	L	R	A	Q	G	.	T	P	V	R	I	A	T	G	E	N	L	Y	T	R	N	A	F	N	D	Y	I	R	N	D	A	I	D	V	L	Q	A	D	A	S	R	A	G	G	I	T	E	A	L	A	I	S	A	S
Template Known Secondary structure								T	T		S				S		S		T	T										T	T		.		S	S						T	T													T	T			S						T	T	T	S	S
Template Predicted Secondary structure																																	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	S	R	G	Q	L	V	V	P	H	G	S	S	V	Y	S	H	H	A	V	I	T	F	T	N	T	P	F	S	E	F	L	M	T	S	P	D	C	S	T	M	R	P	Q	F	D	P	I	L	L	N	E	P	V	P	V	N	G	R	I	H	K	S	V	L	D	K	P	G	F	G	V	E	L	N	R	D	C	N
Query Conservation
Alig confidence																																							.																								.	.
Template Conservation																																							.																								.	.
Template Sequence		A	A	S	A	H	L	A	W	N	P	H	T	F	N	D	I	I	T	V	A	A	N	L	H	L	V	A	A	S	P	H	P	A	M	F	E	W	.	D	I	T	H	N	D	L	M	T	R	L	A	S	Y	D	L	K	L	E	N	G	L	V	.	.	Q	P	P	Q	G	P	G	L	G	F	E	I	D	W	D	F	V
Template Known Secondary structure					T	T								T	T	S														S	S	S							.			S	S		G	G	G	T	T	S	B	S						B	T	T			.	.					S	S	B	T	S	S		B
Template Predicted Secondary structure																																							.																								.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.			.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		395	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	R	P	Y	S	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	H	A	W	K	G
Template Known Secondary structure				T	B			S
Template Predicted Secondary structure
Template SS confidence
		371	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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