Phyre 2 alignment of P77215 with c3fv9D

Job Description P77215
Confidence 100.00% Date Thu Jan 5 12:26:27 GMT 2012

Rank 55 Aligned Residues 350

% Identity 19% Template c3fv9D_

PDB info PDB header:hydrolase Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of putative mandelate racemase/muconatelactonizing2 enzyme from roseovarius nubinhibens ism complexed with magnesium

Resolution 1.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	I	K	Q	V	R	A	W	F	T	G	G	A	T	A	E	K	G	A	G	G	G	D	Y	H	D	Q	G	A	N	H	W	I	D	D	H	I	A	T	P	M	S	K	Y	R	D	Y	E	Q	S	R	Q	S	F	G	I	N	V	L	G	T	L	V	V	E	V	E	A	E	N	G	Q	T	G	F	A	V	S	T	A
Query Conservation
Alig confidence																				.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	K	I	T	R	I	D	I	H	R	T	D	L	P	V	R	G	G	V	Y	.	.	.	.	.	R	L	S	G	G	R	E	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	S	Y	D	A	T	I	V	S	I	E	T	D	T	G	L	T	G	W	G	E	S	T	P
Template Known Secondary structure														B	S	S	S			.	.	.	.	.			G	G	G				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S												T	T	S
Template Predicted Secondary structure																				.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20						.	.	.	.	.	.	.	.																									.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.

	85	.	.									.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.
Query Sequence	G	E	M	.	.	.	.	.	.	.	.	G	C	F	I	V	E	K	H	L	N	R	F	I	E	G	K	C	V	S	D	I	K	L	I	H	D	Q	M	L	S	A	T	L	Y	Y	S	G	S	G	G	L	V	M	N	T	I	S	C	V	D	L	A	L	W	D	L	F	G	K	V	V	G	L	P	V	Y	K	L	L
Query Conservation				.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.
Template Sequence	F	G	S	T	Y	I	A	A	H	A	G	G	T	R	A	A	L	E	L	L	A	P	A	I	L	G	M	D	P	R	Q	H	D	R	I	W	D	R	M	R	D	T	L	K	G	H	R	.	.	.	.	.	.	.	D	A	R	A	A	L	D	I	A	C	W	D	I	A	A	Q	A	A	G	L	P	L	C	D	M	T
Template Known Secondary structure	S	T	T	S	S	S	S																		T	T	S		T	T														S	S			.	.	.	.	.	.	.																			T		B	G	G	G	T	T
Template Predicted Secondary structure																																																.	.	.	.	.	.	.
Template SS confidence
	53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.								100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.

	157	.	.	160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.						.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.																														.	.	.	.	.
Query SS confidence														.	.																														.	.	.	.	.
Query Sequence	G	G	A	V	R	D	E	I	Q	F	Y	A	T	.	.	G	A	R	P	D	L	A	K	E	M	G	F	I	G	G	K	M	P	T	H	W	G	P	H	D	G	D	A	G	.	.	.	.	.	I	R	K	D	A	A	M	V	A	D	M	R	E	K	C	G	E	D	F	W	L	M	L	D	C	W	M	S	Q	D	V
Query Conservation														.	.																														.	.	.	.	.
Alig confidence														.	.																														.	.	.	.	.
Template Conservation
Template Sequence	G	G	R	V	A	G	P	V	P	V	I	S	S	I	G	G	D	T	P	E	A	M	R	A	K	V	A	R	H	R	A	Q	G	F	K	G	H	S	I	K	I	G	A	S	E	A	E	G	G	P	A	L	D	A	E	R	I	T	A	C	L	A	D	R	Q	P	G	E	W	Y	L	A	D	A	N	N	G	L	T	V
Template Known Secondary structure	T				S	S		B								S																	T												T	T	T	T														T	T			T	T								T	T
Template Predicted Secondary structure
Template SS confidence
	126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.

	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence	N	Y	A	T	K	L	A	H	A	C	A	P	Y	N	L	K	W	I	E	E	C	L	P	P	Q	Q	Y	E	S	Y	R	E	L	K	R	N	A	P	V	G	M	M	V	T	S	G	E	H	H	G	T	L	Q	S	F	R	T	L	S	E	.	T	G	I	D	I	M	Q	P	D	V	G	W	C	G	G	L	T	T	L
Query Conservation																																																													.
Alig confidence																								.	.												.	.																							.
Template Conservation																								.	.												.	.
Template Sequence	E	H	A	L	R	M	L	S	L	L	P	P	G	L	D	I	V	L	E	A	P	C	A	.	.	S	W	A	E	T	K	S	L	R	A	R	.	.	C	A	L	P	L	L	L	D	E	L	I	Q	T	E	T	D	L	I	A	A	I	R	D	D	L	C	D	G	V	G	L	K	V	S	K	Q	G	G	I	T	P	M
Template Known Secondary structure										S		S	S										S	.	.	S									T	T	.	.			S					S	T	T			S										T	T			S										T	S
Template Predicted Secondary structure																								.	.												.	.
Template SS confidence
	206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.			.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

	309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence	V	E	I	A	A	I	A	K	S	R	G	Q	L	V	V	P	H	G	S	.	S	V	Y	S	H	H	A	V	I	T	F	T	N	T	P	F	S	E	F	L	M	T	S	P	D	C	S	T	M	R	P	Q	F	D	P	I	L	L	N	E	P	V	P	V	N	G	R	I	H	K	S	V	L	D	K	P	G	F	G	V
Query Conservation																				.
Alig confidence																				.																										.																							.	.
Template Conservation																																														.																							.	.
Template Sequence	L	R	Q	R	A	I	A	A	A	A	G	M	V	M	S	V	Q	D	T	V	G	S	Q	I	S	F	A	A	I	L	H	L	A	Q	S	T	P	R	H	L	L	R	C	A	L	.	D	T	R	A	M	T	T	A	E	L	A	E	I	D	A	P	L	R	D	G	G	A	.	.	S	A	P	S	D	P	G	L	G	L
Template Known Secondary structure											T								S	S															T	S		T	T	T						.		G	G	G	T	B				S							S	B	T	T	B	B	.	.					S	S	B	T
Template Predicted Secondary structure																																														.																							.	.
Template SS confidence
	282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.			.	350	.	.	.	.	.	.	.	.

	388	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	L	N	R	D	C	N	L	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence	R	V	N	R	D	A	L	G	T	P
Template Known Secondary structure				G	G	G	T		S
Template Predicted Secondary structure
Template SS confidence
	359	360	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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