Job Description P77215 Confidence 100.00% Date Thu Jan 5 12:26:27 GMT 2012 Rank 69 Aligned Residues 344 % Identity 17% Template c3eezA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:putative mandelate racemase/muconate lactonizing PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing enzyme from silicibacter pomeroyi Resolution 2.80 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		K	I	K	Q	V	R	A	W	F	T	G	G	A	T	A	E	K	G	A	G	G	G	D	Y	H	D	Q	G	A	N	H	W	I	D	D	H	I	A	T	P	M	S	K	Y	R	D	Y	E	Q	S	R	Q	S	F	G	I	N	V	L	G	T	L	V	V	E	V	E	A	E	N	G	Q	T	G	F	A	V	S	T	.
Query Conservation																																																																																	.
Alig confidence																				.	.	.	.	.	.	.	.	.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation																				.	.	.	.	.	.	.	.	.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	T	R	I	T	V	Y	Q	V	D	L	P	L	E	H	P	Y	.	.	.	.	.	.	.	.	.	W	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	L	L	D	A	T	L	V	K	L	E	T	D	A	G	I	T	G	W	G	E	G	T	P
Template Known Secondary structure															B	S	S			.	.	.	.	.	.	.	.	.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.										20	.																											.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.
									84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	A	G	E	M	G	C	F	I	V	E	K	H	L	N	R	F	I	E	G	K	C	V	S	D	I	K	L	I	H	D	Q	M	L	S	A	T	L	Y	Y	S	G	S	G	G	L	V	M	N	T	I	S	C	V	D	L	A	L	W	D	L	F	G	K	V	V	G	L	P	V	Y	K	L	L
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																									.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.
Template Sequence		W	G	H	T	Y	V	P	A	H	G	P	G	I	R	A	G	I	E	T	M	A	P	F	V	L	G	L	D	P	R	R	L	L	D	V	E	R	A	M	D	I	A	L	P	G	H	L	.	.	.	.	.	.	.	Y	A	K	S	P	I	D	M	A	C	W	D	I	A	G	Q	A	A	G	L	P	I	A	D	L	M
Template Known Secondary structure		S		S	S	S	S	S																		T	T	S		T	T													S	S	S			.	.	.	.	.	.	.																		T	T	S	B					T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.								100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		G	G	A	V	R	D	E	I	Q	F	Y	A	T	.	.	G	A	R	P	D	L	A	K	E	M	G	F	I	G	G	K	M	P	T	H	W	G	P	H	D	G	D	A	G	I	R	K	D	A	A	M	V	A	D	M	R	E	K	C	G	E	D	F	W	L	M	L	D	C	W	M	S	Q	D	V	N	Y	A	T	K
Query Conservation															.	.
Alig confidence															.	.
Template Conservation
Template Sequence		G	G	G	S	R	T	P	R	P	I	A	S	S	V	G	A	K	S	V	E	E	T	R	A	V	I	D	R	Y	R	Q	R	G	Y	V	A	H	S	V	K	I	G	G	D	V	E	R	D	I	A	R	I	R	D	V	E	D	I	R	E	P	G	E	I	V	L	Y	D	V	N	R	G	W	T	R	Q	Q	A	L	R
Template Known Secondary structure		T					S				B	B			B		S																T	T										S													T	T	S			T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		L	A	H	A	C	A	P	Y	N	L	K	W	I	E	E	C	L	P	P	Q	Q	Y	E	S	Y	R	E	L	K	R	N	A	P	V	G	M	M	V	T	S	G	E	H	H	G	T	L	Q	S	F	R	T	L	S	E	.	T	G	I	D	I	M	Q	P	D	V	G	W	C	G	G	L	T	T	L	V	E	I	A	A
Query Conservation																																																									.
Alig confidence												.							.	.													.	.																							.
Template Conservation												.							.	.													.	.
Template Sequence		V	M	R	A	T	E	D	L	H	V	.	M	F	E	Q	P	G	.	.	E	T	L	D	D	I	A	A	I	R	P	L	.	.	H	S	A	P	V	S	V	D	E	C	L	V	T	L	Q	D	A	A	R	V	A	R	D	G	L	A	E	V	F	G	I	K	L	N	R	V	G	G	L	T	R	A	A	R	M	R	D
Template Known Secondary structure						T	G	G	G	T		.						S	.	.	S	S							T	G	G	G	.	.									T	T			S										T	T			S										T	S
Template Predicted Secondary structure												.							.	.													.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		314	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		I	A	K	S	R	G	Q	L	V	V	P	H	G	S	.	S	V	Y	S	H	H	A	V	I	T	F	T	N	T	P	F	S	E	F	L	M	T	S	P	D	C	S	T	M	R	P	Q	F	D	P	I	L	L	N	E	P	V	P	V	N	G	R	I	H	K	S	V	L	D	K	P	G	F	G	V	E	L	N	R	D
Query Conservation																.
Alig confidence																.																																																	.	.
Template Conservation																																																																	.	.
Template Sequence		I	A	L	T	H	G	I	D	M	F	V	M	A	T	G	G	S	V	L	A	D	A	E	A	L	H	L	A	A	T	I	P	D	H	A	C	H	A	V	W	A	C	Q	D	M	L	T	V	D	I	A	G	G	R	G	P	R	N	I	D	G	H	L	.	.	H	L	P	E	T	P	G	L	G	V	H	P	D	E	D
Template Known Secondary structure						T	T								S	S		S													T	S		G	G	G	B			B			S	G	G	G	B	S			T	T	T	T		S	S			B	T	T			.	.					S	S	B	T	S					T	T
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.			.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
		393	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	N	L	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	G	D	P
Template Known Secondary structure		S	S		S
Template Predicted Secondary structure
Template SS confidence
		359	360	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions