Return to main results Retrieve Phyre Job Id

Job DescriptionP77215
Confidence100.00%DateThu Jan 5 12:26:27 GMT 2012
Rank98Aligned Residues301
% Identity13%Templatec3cawB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:o-succinylbenzoate synthase; PDBTitle: crystal structure of o-succinylbenzoate synthase from2 bdellovibrio bacteriovorus liganded with mg
Resolution1.87 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   57..60.... .....70.........80.... .....90.........100.........110.........120.........130
Predicted Secondary structure 






.....






.












Query SS confidence 







. . . . .



















.













































Query Sequence  SFGINVLG. . . . . TLVVEVEAENGQTGFAVSTA. GEMGCFIVEKHLNRFIEGKCVSDIKLIHDQMLSATLYYSGSGGLVM
Query Conservation          ..... 
 
 
 

 

 
 

   .       
   


 


 

   
 
   
        
  
   
Alig confidence 







.....



















.




















........................
Template Conservation      
      
  




 

 
  
 

  
 
    
 
             ........................ 
Template Sequence  SYSPYTLKPVAREGVLLKVEWNDGLYGFADLHPWPELGDLSLEEQLSDLRMGRMT. . . . . . . . . . . . . . . . . . . . . . . . T
Template Known Secondary structure 
B


TTS



GGGT


TT


........................
Template Predicted Secondary structure 































........................
Template SS confidence 















































































   5....10.........20.........30.........40.........50......... 60
 
   131........140.........150.........160.........170.........180.........190.........200.........210
Predicted Secondary structure 



























Query SS confidence 















































































Query Sequence  NTISCVDLALWDLFGKVVGLPVYKLLGGAVRDEIQFYATGARPDLAKEMGFIGGKMPTHWGPHDGDAGIRKDAAMVADMR
Query Conservation   











 

  
 

  



  
  

 


          
    
        
       
   
 


Alig confidence 



























....















































Template Conservation   
  


 



  

  
 

  


 ....                        
    




     

 


   
Template Sequence  QIEQSIWLARRDALLRKEKKHVFDGGEK. . . . IKNNYLLSHFQDLKPGFLDGLKNEGYNTVKVKMGRDLQKEADMLTHIA
Template Known Secondary structure  T
BTTTTS

....

B

TTS


TTTT


SS
Template Predicted Secondary structure 






....
















Template SS confidence 















































































   71........80.........90........ .100.........110.........120.........130.........140......
 
   211........220.........230.........240.........250.........260.........270.........280.........290
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  EKCGEDFWLMLDCWMSQDVNYATKLAHACAPYNLKWIEECLPPQQYESYRELKRNAPVGMMVTSGEHHGTLQSFRTLSET
Query Conservation 
 

 
  
 



  
    
      

   
 




   

      
       



 

          
   
Alig confidence  ...



















































..




















.
Template Conservation  ...
    
 



   
   
      
       

  
 
            ..   


 

            . 
Template Sequence  . . . ASGMRMRLDFNALGSWQTFEKFMVNLPLTVRPLIEYVEDPFPFDFHAWGEAR. . KLAKIALDNQYDKVPWGKIAS. A
Template Known Secondary structure  ...TT

TT
S
S
TTTGGG

SS

T..TTS
STTGGGS
GGG
SS.
Template Predicted Secondary structure  ...























..











.
Template SS confidence 















































































   147..150.........160.........170.........180.........190........ .200.........210......... 220
 
   291........300.........310.........320....... ..330.........340.........350 .........360......
Predicted Secondary structure 















.









...









Query SS confidence 




































.






















. . .















Query Sequence  GIDIMQPDVGWCGGLTTLVEIAAIAKSRGQLVVPHGS. SVYSHHAVITFTNTPFSEFLMTS. . . PDCSTMRPQFDPILLN
Query Conservation 





 
    



   


 

 
 

 
 

  .       
     
        
...                
Alig confidence 








....























.






















...















Template Conservation       
 

....
          
   

        

 

 

 




                       
    
Template Sequence  PFDVIVIKP. . . . AKTDVDKAVAQCQKWNLKLAVTSYMDHPVGVVHAVGVAMELKDKYGDMILESGCLTHRLYQMDSFAA
Template Known Secondary structure  S
S
T....TTS
TT
B

S

GGGB

BB


GGGB


TTGG
Template Predicted Secondary structure 




....






























Template SS confidence 















































































   221........ 230.........240.........250.........260.........270.........280.........290......
 
   367..370.........380.........390.......
Predicted Secondary structure 















Query SS confidence 






























Query Sequence  EPVPVNGRIHKSVLDKPGFGVELNRDCNLKR
Query Conservation   
    
     


 







 
     
Alig confidence 








..



















Template Conservation   
   

 
.. 

 






   
 
  
Template Sequence  ELSTQGPYL. . LKNKGTGVGFDKLLEALTWY
Template Known Secondary structure  G

TT..


SSSBTS
S

Template Predicted Secondary structure 



..











Template SS confidence 






























   297..300..... ....310.........320.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions