Job Description P77215 Confidence 100.00% Date Thu Jan 5 12:26:27 GMT 2012 Rank 87 Aligned Residues 314 % Identity 14% Template c2pgeA_ PDB info PDB header:lyase Chain: A: PDB Molecule:menc; PDBTitle: crystal structure of menc from desulfotalea psychrophila2 lsv54 Resolution 1.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		55	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.								.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure												.																			.	.	.	.	.	.	.
Query SS confidence												.																			.	.	.	.	.	.	.
Query Sequence		R	Q	S	F	G	I	N	V	L	G	.	T	L	V	V	E	V	E	A	E	N	G	Q	T	G	F	A	V	S	.	.	.	.	.	.	.	T	A	G	E	M	G	C	F	I	V	E	K	H	L	N	R	F	I	E	G	K	C	V	S	D	I	K	L	I	H	D	Q	M	L	S	A	T	L	Y	Y	S	G	S	G
Query Conservation												.																			.	.	.	.	.	.	.
Alig confidence												.							.												.	.	.	.	.	.	.
Template Conservation																			.
Template Sequence		L	I	F	K	R	V	L	T	S	K	P	T	W	F	V	R	L	.	D	I	D	G	H	G	G	Q	G	E	V	S	L	I	P	G	L	S	L	D	P	E	E	Q	I	G	R	E	L	D	L	L	A	R	R	L	R	A	E	E	P	I	R	L	R	Q	F	L	A	E	R	G	G	A	D	F	S	D	Y	R	S	V
Template Known Secondary structure				B															.			T	T											T	T	T		S	S																			S												T	S	S		T	T	S
Template Predicted Secondary structure																			.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		127	.	.	130	.																	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.
Query Sequence		G	L	V	M	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	I	S	C	V	D	L	A	L	W	D	L	F	G	K	V	V	G	L	P	V	Y	K	L	L	G	G	A	V	R	D	E	I	Q	F	Y	A	T	G	.	.	A	R	P	D	L	A	K	E	M	G	F	I	G	G	K	M	P	T
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.											.	.
Template Conservation																																																			.
Template Sequence		L	T	D	I	A	G	I	L	D	S	W	Q	V	S	T	D	G	R	F	P	A	L	R	F	A	L	E	M	A	L	L	D	L	L	S	G	G	R	Q	E	W	F	A	S	D	F	T	R	G	.	E	K	R	I	P	V	N	G	L	I	W	M	G	E	A	A	F	M	Q	E	Q	I	E	A	K	L	A	E	G	Y
Template Known Secondary structure												T	T	S	S	T	T	S	S																		T	S	S	S		S	S		S	T	T	T	T	T	.	S					B																						T	T
Template Predicted Secondary structure																																																			.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		H	W	G	P	H	D	G	D	A	G	I	R	K	D	A	A	M	V	A	D	M	R	E	K	C	G	.	E	D	F	W	L	M	L	D	C	W	M	S	Q	D	V	N	Y	A	T	K	L	A	H	A	C	A	P	Y	N	L	K	W	I	E	E	C	L	P	P	Q	Q	Y	E	S	Y	R	E	L	K	R	N	A	P
Query Conservation																												.
Alig confidence									.	.																		.																																																				.	.
Template Conservation									.	.																																																																						.	.
Template Sequence		G	C	L	K	L	K	I	.	.	D	F	D	K	E	C	A	L	L	A	G	I	R	E	S	F	S	P	Q	Q	L	E	I	R	V	D	A	N	G	A	F	S	P	A	N	A	P	Q	R	L	K	R	L	S	Q	F	H	L	H	S	I	E	Q	P	I	R	Q	H	Q	W	S	E	M	A	A	L	C	A	N	.	.
Template Known Secondary structure		S							.	.																S		T	T	T								T	T	B	B		T	T	T										T	T			S						B		S	S												.	.
Template Predicted Secondary structure									.	.																																																																						.	.
Template SS confidence
		179	180	.	.	.	.	.			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.				.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure																					.	.	.																																										.
Query SS confidence																					.	.	.																																										.
Query Sequence		V	G	M	M	V	T	S	G	E	H	H	G	T	L	Q	S	F	R	T	.	.	.	L	S	E	T	G	I	D	I	M	Q	P	D	V	G	W	C	G	G	L	T	T	L	V	E	I	A	A	I	A	K	S	R	G	Q	L	V	V	P	H	G	S	.	S	V	Y	S	H	H	A	V	I	T	F	T	N	T	P	F
Query Conservation																					.	.	.																																										.
Alig confidence																					.	.	.																																										.
Template Conservation
Template Sequence		S	P	L	A	I	A	L	D	E	E	L	I	G	L	G	A	E	Q	R	S	A	M	L	D	A	I	R	P	Q	Y	I	I	L	K	P	S	L	L	G	G	F	H	Y	A	G	Q	W	I	E	L	A	R	E	R	G	I	G	F	W	I	T	S	A	L	E	S	N	L	G	L	A	A	I	A	Q	W	T	A	L	Y
Template Known Secondary structure			S	S					S	G	G	G	T	T			T													S										T	S														T	T						B			S															T	T
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	F	L	M	T	S	P	D	C	S	T	M	R	P	Q	F	D	P	I	L	L	N	E	P	V	P	V	N	G	R	I	H	K
Query Conservation
Alig confidence						.	.	.
Template Conservation						.	.	.
Template Sequence		Q	P	T	M	.	.	.	P	Q	G	L	G	T	G	Q	L	Y	T	N	N	L	P	S	N	L	A	V	D	G	G	L	L	G	V
Template Known Secondary structure				S	S	.	.	.		B	B		S					B	S	S										S	S
Template Predicted Secondary structure						.	.	.
Template SS confidence
		338	.	340	.				.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions