Job Description P77215 Confidence 100.00% Date Thu Jan 5 12:26:27 GMT 2012 Rank 62 Aligned Residues 347 % Identity 18% Template c2p88E_ PDB info PDB header:lyase Chain: E: PDB Molecule:mandelate racemase/muconate lactonizing enzyme PDBTitle: crystal structure of n-succinyl arg/lys racemase from2 bacillus cereus atcc 14579 Resolution 2.40 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	K	Q	V	R	A	W	F	T	G	G	A	T	A	E	K	G	A	G	G	G	D	Y	H	D	Q	G	A	N	H	W	I	D	D	H	I	A	T	P	M	S	K	Y	R	D	Y	E	Q	S	R	Q	S	F	G	I	N	V	L	G	T	L	V	V	E	V	E	A	E	N	G	Q	T	G	F	A	V	S	T	A
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	T	A	I	H	L	Y	A	I	R	L	P	L	R	N	P	F	V	.	.	.	.	.	.	.	.	I	S	Y	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	D	M	P	S	I	I	V	K	M	E	T	D	E	G	I	I	G	Y	G	E	G	V	A
Template Known Secondary structure																					.	.	.	.	.	.	.	.		T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20									.	.	.	.	.																								.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50
		85									.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.
Query Sequence		G	.	.	.	.	.	.	.	.	E	M	G	C	F	I	V	E	K	H	L	N	R	F	I	E	G	K	C	V	S	D	I	K	L	I	H	D	Q	M	L	S	A	T	L	Y	Y	S	G	S	G	G	L	V	M	N	T	I	S	C	V	D	L	A	L	W	D	L	F	G	K	V	V	G	L	P	V	Y	K	L	L
Query Conservation			.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.
Template Sequence		D	D	H	V	T	G	E	S	W	E	S	T	F	H	T	L	K	H	T	L	T	P	A	L	I	G	Q	N	P	M	N	I	E	K	I	H	D	M	M	D	N	T	I	Y	G	V	P	.	.	.	.	.	.	.	T	A	K	A	A	I	D	I	A	C	F	D	I	M	G	K	K	L	N	Q	P	V	Y	Q	L	I
Template Known Secondary structure							S													T						T	T			T	T														S				.	.	.	.	.	.	.																		T	T	S	B	G	G	G	G	T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.								.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.
Predicted Secondary structure																.	.																																																										.
Query SS confidence																.	.																																																										.
Query Sequence		G	G	A	V	R	D	E	I	Q	F	Y	A	T	G	.	.	A	R	P	D	L	A	K	E	M	G	F	I	G	G	K	M	P	T	H	W	G	P	H	D	G	D	A	G	I	R	K	D	A	A	M	V	A	D	M	R	E	K	C	G	E	D	F	W	L	M	L	D	C	W	M	S	Q	.	D	V	N	Y	A	T
Query Conservation																.	.																																																										.
Alig confidence																.	.																																																										.
Template Conservation
Template Sequence		G	G	R	Y	H	E	E	F	P	V	T	H	V	L	S	I	A	D	P	E	N	M	A	E	E	A	A	S	M	I	Q	K	G	Y	Q	S	F	K	M	K	V	G	T	N	V	K	E	D	V	K	R	I	E	A	V	R	E	R	V	G	N	D	I	A	I	R	V	D	V	N	Q	G	W	K	N	S	A	N	T	L
Template Known Secondary structure		T					S										S															T	T	T										S																T	T	T	S	S							T	T	T	T	B	S
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		K	L	A	H	A	C	A	P	Y	N	L	K	W	I	E	E	C	L	P	P	Q	Q	Y	E	S	Y	R	E	L	K	R	N	A	P	V	G	M	M	V	T	S	G	E	H	H	G	T	L	Q	S	F	R	T	L	S	E	.	T	G	I	D	I	M	Q	P	D	V	G	W	C	G	G	L	T	T	L	V	E	I	A
Query Conservation																																																										.
Alig confidence																																		.	.																							.
Template Conservation																																		.	.
Template Sequence		T	A	L	R	S	L	G	H	L	N	I	D	W	I	E	Q	P	V	I	A	D	D	I	D	A	M	A	H	I	R	S	K	.	.	T	D	L	P	L	M	I	D	E	G	L	K	S	S	R	E	M	R	Q	I	I	K	L	E	A	A	D	K	V	N	I	K	L	M	K	C	G	G	I	Y	P	A	V	K	L	A
Template Known Secondary structure						T	S	T	T	T	T		S						B		T	T											T	.	.			S					S	T	T			S											T			S										T	S
Template Predicted Secondary structure																																		.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		A	I	A	K	S	R	G	Q	L	V	V	P	H	G	.	S	S	V	Y	S	H	H	A	V	I	T	F	T	N	T	P	F	S	E	F	L	M	T	S	P	D	C	S	T	M	R	P	Q	F	D	P	I	L	L	N	E	P	V	P	V	N	G	R	I	H	K	S	V	L	D	K	P	G	F	G	V	E	L	N	R
Query Conservation																.
Alig confidence																.																											.	.	.	.																				.	.
Template Conservation																																											.	.	.	.																				.	.
Template Sequence		H	Q	A	E	M	A	G	I	E	C	Q	V	G	S	M	V	E	S	S	V	A	S	S	A	G	F	H	V	A	F	S	K	K	I	I	T	S	V	E	L	T	.	.	.	.	G	P	L	K	F	T	K	D	I	G	N	L	H	Y	D	V	P	F	I	.	.	R	L	N	E	K	P	G	L	G	I	E	I	N	E
Template Known Secondary structure							T	T								S	S																	T	T								.	.	.	.	G	G	G	T	B	S			S	S						T	T			.	.						S	B	T
Template Predicted Secondary structure																																											.	.	.	.																				.	.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.					.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.
		392	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	C	N	L	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	T	L	Q	E	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		356	.	.	.	360	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions