Job Description P77215 Confidence 100.00% Date Thu Jan 5 12:26:27 GMT 2012 Rank 41 Aligned Residues 355 % Identity 21% Template c2hzgB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme/enolase PDBTitle: crystal stucture of predicted mandelate racemase from rhodobacter2 sphaeroides Resolution 2.02 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	K	Q	V	R	A	W	F	T	G	G	A	T	A	E	K	G	A	G	G	G	D	Y	H	D	Q	G	A	N	H	W	I	D	D	H	I	A	T	P	M	S	K	Y	R	D	Y	E	Q	S	R	Q	S	F	G	I	N	V	L	G	T	L	V	V	E	V	E	A	E	N	G	Q	T	G	F	A	V	S	T	A
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template Sequence		K	I	D	A	V	D	L	F	Y	L	S	M	P	E	V	T	D	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	S	Q	D	A	L	L	V	R	V	A	A	G	.	G	H	I	G	W	G	E	C	E	A
Template Known Secondary structure		B												S	S			S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G										T	.	T								S	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.																																					.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.										.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.
Query Sequence		G	E	M	G	C	F	I	V	E	.	.	.	.	.	.	.	.	.	K	H	L	N	R	F	I	E	G	K	C	V	S	D	I	K	L	I	H	D	Q	M	L	S	A	T	L	Y	Y	S	G	S	G	G	L	V	M	N	T	I	S	C	V	D	L	A	L	W	D	L	F	G	K	V	V	G	L	P	V	Y	K	L
Query Conservation											.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.																														.
Template Conservation																																																	.
Template Sequence		A	P	L	P	S	I	A	A	F	V	C	P	K	S	H	G	V	C	R	P	V	S	D	S	V	L	G	Q	R	L	D	G	P	D	D	I	A	R	I	A	A	L	V	G	Y	N	S	.	M	D	L	L	Q	A	P	H	M	L	S	G	I	E	M	A	L	W	D	L	L	G	R	R	L	S	A	P	A	W	A	L
Template Known Secondary structure															S	B	T	T	B			G	G	G	G	T	T	T		B		S	S															T	.	T	T		T	T																				T	T		B
Template Predicted Secondary structure																																																	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.				170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.					.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.																											.	.	.	.																																	.
Query SS confidence																.	.	.																											.	.	.	.																																	.
Query Sequence		L	G	G	A	V	R	D	E	I	Q	F	Y	A	T	.	.	.	G	A	R	P	D	L	A	K	E	M	G	F	I	G	G	K	M	P	T	H	W	G	P	H	D	G	.	.	.	.	D	A	G	I	R	K	D	A	A	M	V	A	D	M	R	E	K	C	G	E	D	F	W	L	M	L	D	C	W	M	S	Q	.
Query Conservation																.	.	.																											.	.	.	.																																	.
Alig confidence																.	.	.																											.	.	.	.																																	.
Template Conservation
Template Sequence		L	G	Y	S	A	S	H	G	K	R	P	Y	A	S	L	L	F	G	D	T	P	Q	E	T	L	E	R	A	R	A	A	R	R	D	G	F	A	A	V	K	F	G	W	G	P	I	G	R	G	T	V	A	A	D	A	D	Q	I	M	A	A	R	E	G	L	G	P	D	G	D	L	M	V	D	V	G	Q	I	F	G
Template Known Secondary structure		T	T		S					B										S	S														T	T		S						S	T	T	T	T	S	S																		S	S	S							T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
			228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure		.																																																															.
Query SS confidence		.																																																															.
Query Sequence		.	D	V	N	Y	A	T	K	L	A	H	A	C	A	P	Y	N	L	K	W	I	E	E	C	L	P	P	Q	Q	Y	E	S	Y	R	E	L	K	R	N	A	P	V	G	M	M	V	T	S	G	E	H	H	G	T	L	Q	S	F	R	T	L	S	E	.	T	G	I	D	I	M	Q	P	D	V	G	W	C	G	G	L
Query Conservation		.																																																															.
Alig confidence		.																																								.																							.
Template Conservation																																										.
Template Sequence		E	D	V	E	A	A	A	A	R	L	P	T	L	D	A	A	G	V	L	W	L	E	E	P	F	D	A	G	A	L	A	A	H	A	A	L	A	G	R	G	.	A	R	V	R	I	A	G	G	E	A	A	H	N	F	H	M	A	Q	H	L	M	D	Y	G	R	I	G	F	I	Q	I	D	C	G	R	I	G	G	L
Template Known Secondary structure		T							T	T							T	T								S		T	T										T	T		.		S	S						T	T			S										T	S			S										T	S
Template Predicted Secondary structure																																										.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370		.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		T	T	L	V	E	I	A	A	I	A	K	S	R	G	Q	L	V	V	P	H	G	S	S	V	Y	S	H	H	A	V	I	T	F	T	N	T	P	F	S	E	F	L	M	T	S	P	D	C	S	T	M	R	P	Q	F	D	P	I	L	L	N	E	P	V	P	.	V	N	G	R	I	H	K	S	V	L	D	K	P	G
Query Conservation																																																																			.
Alig confidence																																																					.														.						.	.
Template Conservation																																																					.																				.	.
Template Sequence		G	P	A	K	R	V	A	D	A	A	Q	A	R	G	I	T	Y	V	N	H	T	F	T	S	H	L	A	L	S	A	S	L	Q	P	F	A	G	L	E	A	D	R	I	C	E	Y	P	A	A	P	Q	.	Q	L	A	L	D	I	T	G	D	H	I	R	P	D	A	E	G	L	I	.	.	R	A	P	E	A	P	G
Template Known Secondary structure															T									S										G	G	G	T	T		T	T									S			.						T	B	S	S						T	T	S		B	.	.		S		S	S	S	B
Template Predicted Secondary structure																																																					.																				.	.
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.			.	.	.	.	.	360	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	V	E	L	N	R	D	C	N	L	K	R	P	Y	S	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	L	Q	V	A	A	S	A	L	R	R	Y	L	V	E	T
Template Known Secondary structure		T				B									B
Template Predicted Secondary structure
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions