Job Description P77215 Confidence 100.00% Date Thu Jan 5 12:26:27 GMT 2012 Rank 56 Aligned Residues 352 % Identity 21% Template c2gdqB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:yitf; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from bacillus subtilis at 1.8 a resolution Resolution 1.80 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	K	I	K	Q	V	R	A	W	F	T	G	G	A	T	A	E	K	G	A	G	G	G	D	Y	H	D	Q	G	A	N	H	W	I	D	D	H	I	A	T	P	M	S	K	Y	R	D	Y	E	Q	S	R	Q	S	F	G	I	N	V	L	G	T	L	V	V	E	V	E	A	E	N	G	Q	T	G	F	A	V	S
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	K	I	V	R	I	E	T	F	P	L	F	H	R	L	E	K	P	Y	G	.	.	.	.	.	.	.	.	D	A	N	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	Y	R	T	C	Y	L	I	R	I	I	T	E	S	G	I	D	G	W	G	E	C
Template Known Secondary structure				B																			.	.	.	.	.	.	.	.		T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.									.	.	.	.	.																								.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.
		83	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		T	A	.	G	E	M	G	C	F	I	V	E	K	H	L	N	R	F	I	E	G	K	C	V	S	D	I	K	L	I	H	D	Q	M	L	S	A	T	L	Y	Y	S	G	S	G	G	L	V	M	N	T	I	S	C	V	D	L	A	L	W	D	L	F	G	K	V	V	G	L	P	V	Y	K	L	L	G	G	A	V	R
Query Conservation				.
Alig confidence				.																																					.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.
Template Sequence		V	D	W	L	P	A	L	H	V	G	F	T	K	R	I	I	P	F	L	L	G	K	Q	A	G	S	R	L	S	L	V	R	T	I	Q	K	W	H	Q	.	.	.	.	.	.	.	.	.	.	R	A	A	S	A	V	S	M	A	L	T	E	I	A	A	K	A	A	D	C	S	V	C	E	L	W	G	G	R	Y	R
Template Known Secondary structure			S												T						T	T	S	B	T	T											T	T			.	.	.	.	.	.	.	.	.	.																		T	T	S	B					T	T			S
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90											.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		162	.	.	.	.	.	.	.	170	.	.								.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.																										.
Query SS confidence													.	.	.	.	.	.	.																										.
Query Sequence		D	E	I	Q	F	Y	A	T	G	A	R	.	.	.	.	.	.	.	P	D	L	A	K	E	M	G	F	I	G	G	K	M	P	T	H	W	G	P	H	D	G	D	A	.	G	I	R	K	D	A	A	M	V	A	D	M	R	E	K	C	G	E	D	F	W	L	M	L	D	C	W	M	S	Q	D	V	N	Y	A	T
Query Conservation													.	.	.	.	.	.	.																										.
Alig confidence													.	.	.	.	.	.	.																										.
Template Conservation
Template Sequence		E	E	I	P	V	Y	A	S	F	Q	S	Y	S	D	S	P	Q	W	I	S	R	S	V	S	N	V	E	A	Q	L	K	K	G	F	E	Q	I	K	V	K	I	G	G	T	S	F	K	E	D	V	R	H	I	N	A	L	Q	H	T	A	G	S	S	I	T	M	I	L	D	A	N	Q	S	Y	D	A	A	A	A	F
Template Known Secondary structure		S										B		B	S	S	T	T															T	T									S	S	S																		T	T	S							T	T
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		234	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure											.																																																.
Query SS confidence											.																																																.
Query Sequence		K	L	A	H	A	C	A	P	Y	.	N	L	K	W	I	E	E	C	L	P	P	Q	Q	Y	E	S	Y	R	E	L	K	R	N	A	P	V	G	M	M	V	T	S	G	E	H	H	G	T	L	Q	S	F	R	T	L	S	E	.	T	G	I	D	I	M	Q	P	D	V	G	W	C	G	G	L	T	T	L	V	E	I
Query Conservation											.																																																.
Alig confidence											.																								.	.																							.
Template Conservation																																			.	.
Template Sequence		K	W	E	R	Y	F	S	E	W	T	N	I	G	W	L	E	E	P	L	P	F	D	Q	P	Q	D	Y	A	M	L	R	S	R	.	.	L	S	V	P	V	A	G	G	E	N	M	K	G	P	A	Q	Y	V	P	L	L	S	Q	R	C	L	D	I	I	Q	P	D	V	M	H	V	N	G	I	D	E	F	R	D	C
Template Known Secondary structure		T	T					T	T		S									S		S	S										T	T	.	.		S	S						T	T			S										T	T			S						T	T	T	T	T	S
Template Predicted Secondary structure																																			.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.							.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.
Query Sequence		A	A	I	A	K	S	R	G	Q	L	V	V	P	H	G	S	S	V	Y	S	H	H	A	V	I	T	F	T	N	T	P	F	S	E	F	L	M	T	S	P	D	C	S	T	M	R	P	Q	F	D	P	I	L	L	N	E	.	.	.	.	.	.	P	V	P	V	N	G	R	I	H	K	S	V	L	D	K	P	G	F
Query Conservation																																																										.	.	.	.	.	.
Alig confidence																																														.	.											.	.	.	.	.	.										.	.
Template Conservation																																														.	.																										.	.
Template Sequence		L	Q	L	A	R	Y	F	G	V	R	A	S	A	H	A	Y	D	G	S	L	S	R	L	Y	A	L	F	A	Q	A	C	L	P	P	W	S	K	M	K	N	D	H	I	E	.	.	P	I	E	W	D	V	M	E	N	P	F	T	D	L	V	S	L	Q	P	S	K	G	M	V	H	.	.	I	P	K	G	K	G	I
Template Known Secondary structure									T								T	T		S												T	S			S	S	S		T	T	S		S		.	.							S	S		G	G	G	G	S	B					B	T	T				.	.				S	S	B	T
Template Predicted Secondary structure																																														.	.																										.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.			.	350	.	.	.	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	E	L	N	R	D	C	N	L	K	R	P	Y	S	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	T	E	I	N	M	E	I	V	N	R	Y	K	W	D	G
Template Known Secondary structure		S	S		B								T	B			S
Template Predicted Secondary structure
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions