Job Description P77215 Confidence 100.00% Date Thu Jan 5 12:26:27 GMT 2012 Rank 71 Aligned Residues 351 % Identity 20% Template c2dw7G_ PDB info PDB header:lyase Chain: G: PDB Molecule:bll6730 protein; PDBTitle: crystal structure of d-tartrate dehydratase from2 bradyrhizobium japonicum complexed with mg++ and meso-3 tartrate Resolution 2.50 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		K	I	K	Q	V	R	A	W	F	T	G	G	A	T	A	E	K	G	A	G	G	G	D	Y	H	D	Q	G	A	N	H	W	I	D	D	H	I	A	T	P	M	S	K	Y	R	D	Y	E	Q	S	R	Q	S	F	G	I	N	V	L	G	T	L	V	V	E	V	E	A	E	N	G	Q	T	G	F	A	V	S	.	.
Query Conservation																																																																																.	.
Alig confidence																					.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Conservation																					.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	V	R	I	V	D	V	R	E	I	T	K	P	I	S	S	P	I	R	.	.	.	.	.	.	.	.	N	A	Y	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	T	K	M	T	T	S	L	V	A	V	V	T	D	V	V	R	E	G	K	R	V	V	G	Y
Template Known Secondary structure																		S		B	.	.	.	.	.	.	.	.		S	S		B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T															T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20									.	.	.	.	.																								.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50
						83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.											.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																								.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																								.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	T	A	G	E	M	G	C	F	I	V	E	K	H	L	N	R	F	I	E	G	K	C	V	.	.	.	.	.	.	.	.	.	.	S	D	I	K	L	I	H	D	Q	M	L	S	A	T	L	Y	Y	S	G	S	G	G	L	V	M	N	T	I	S	C	V	D	L	A	L	W	D	L	F	G	K	V	V
Query Conservation		.	.	.	.																								.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																								.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation																																																							.	.
Template Sequence		G	F	N	S	N	G	R	Y	G	Q	G	G	L	I	R	E	R	F	A	S	R	I	L	E	A	D	P	K	K	L	L	N	E	A	G	D	N	L	D	P	D	K	V	W	A	A	M	M	I	N	E	K	P	.	.	G	G	H	G	E	R	S	V	A	V	G	T	I	D	M	A	V	W	D	A	V	A	K	I	A
Template Known Secondary structure						T	T	S										T							T	S		G	G	G	S	B		S	S	S	S	S	B										T	T	T			S	.	.	S			S	S																				T
Template Predicted Secondary structure																																																							.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.			.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160					.	.	.	.	.	.	.	.	.	170	.							.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.												.	.	.	.	.	.																										.
Query SS confidence														.	.	.	.												.	.	.	.	.	.																										.
Query Sequence		G	L	P	V	Y	K	L	L	G	G	A	V	.	.	.	.	R	D	E	I	Q	F	Y	A	T	G	A	.	.	.	.	.	.	R	P	D	L	A	K	E	M	G	F	I	G	G	K	M	P	T	H	W	G	P	H	D	G	D	.	A	G	I	R	K	D	A	A	M	V	A	D	M	R	E	K	C	G	E	D	F
Query Conservation														.	.	.	.												.	.	.	.	.	.																										.
Alig confidence														.	.	.	.												.	.	.	.	.	.																										.
Template Conservation
Template Sequence		G	K	P	L	F	R	L	L	A	E	R	H	G	V	K	A	N	P	R	V	F	V	Y	A	A	G	G	Y	Y	Y	P	G	K	G	L	S	M	L	R	G	E	M	R	G	Y	L	D	R	G	Y	N	V	V	K	M	K	I	G	G	A	P	I	E	E	D	R	M	R	I	E	A	V	L	E	E	I	G	K	D	A
Template Known Secondary structure		T	S	B										T	S															B		T	T																T	T		S							S	S	S																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.
Predicted Secondary structure																																																																										.				.	.	.	.
Query SS confidence																																																																										.				.	.	.	.
Query Sequence		W	L	M	L	D	C	W	M	S	Q	D	V	N	Y	A	T	K	L	A	H	A	C	A	P	Y	N	L	K	W	I	E	E	C	L	P	P	Q	Q	Y	E	S	Y	R	E	L	K	R	N	A	P	V	G	M	M	V	T	S	G	E	H	H	G	T	L	Q	S	F	R	T	L	S	E	.	T	G	I	.	.	.	.
Query Conservation																																																																										.				.	.	.	.
Alig confidence																																																		.	.																							.				.	.	.	.
Template Conservation																																																		.	.
Template Sequence		Q	L	A	V	D	A	N	G	R	F	N	L	E	T	G	I	A	Y	A	K	M	L	R	D	Y	P	L	F	W	Y	E	E	V	G	D	P	L	D	Y	A	L	Q	A	A	L	A	E	F	.	.	Y	P	G	P	M	A	T	G	E	N	L	F	S	H	Q	D	A	R	N	L	L	R	Y	G	G	M	R	P	D	R
Template Known Secondary structure								T	T															T	T	S			S						S		T	T									T	T	T	.	.			S						T	T			S											S				T	T	T
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	M	Q	P	D	V	G	W	C	G	G	L	T	T	L	V	E	I	A	A	I	A	K	S	R	G	Q	L	V	V	P	H	G	S	S	V	Y	S	H	H	A	V	I	T	F	T	N	T	P	F	S	E	F	L	M	T	S	P	D	C	S	T	M	R	P	Q	F	D	P	I	L	L	N	E	P	V	P	V	N
Query Conservation
Alig confidence																																							.	.																				.	.	.
Template Conservation																																							.	.																				.	.	.
Template Sequence		D	W	L	Q	F	D	C	A	L	S	Y	G	L	C	E	Y	Q	R	T	L	E	V	L	K	T	H	G	W	S	P	S	R	C	I	P	H	G	.	.	G	H	Q	M	S	L	N	I	A	A	G	L	G	L	G	G	N	E	S	.	.	.	Y	P	D	L	F	Q	P	Y	G	G	F	P	D	G	V	R	V	E	N
Template Known Secondary structure								G	G	G	T	T															T	T			G	G	G	B			S	S	.	.													T		S					.	.	.		S	S	S	S	T	T	S	S	S			T	T					S
Template Predicted Secondary structure																																							.	.																				.	.	.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.				.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	I	H	K	S	V	L	D	K	P	G	F	G	V	E	L	N	R	D	C	N	L	K	R
Query Conservation
Alig confidence						.	.
Template Conservation						.	.
Template Sequence		G	H	I	T	.	.	M	P	D	L	P	G	I	G	F	E	G	K	S	D	L	Y	K	E	M
Template Known Secondary structure		S				.	.					S	B	T		G	G	G
Template Predicted Secondary structure						.	.
Template SS confidence
		362	.	.	.			.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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