Phyre 2 alignment of P77215 with c1wufB

Job Description P77215
Confidence 100.00% Date Thu Jan 5 12:26:27 GMT 2012

Rank 83 Aligned Residues 344

% Identity 16% Template c1wufB_

PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein lin2664; PDBTitle: crystal structure of protein gi:16801725, member of enolase2 superfamily from listeria innocua clip11262

Resolution 2.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	I	K	Q	V	R	A	W	F	T	G	G	A	T	A	E	K	G	A	G	G	G	D	Y	H	D	Q	G	A	N	H	W	I	D	D	H	I	A	T	P	M	S	K	Y	R	D	Y	E	Q	S	R	Q	S	F	G	I	N	V	L	G	T	L	V	V	E	V	E	A	E	N	G	Q	T	G	F	A	V	S	T	A
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	Y	F	Q	K	A	R	L	I	H	A	E	L	P	L	L	A	P	F	K	.	.	.	.	.	.	.	.	T	S	Y	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	S	K	D	F	Y	I	I	E	L	I	N	E	E	G	I	H	G	Y	G	E	L	E	A
Template Known Secondary structure																				.	.	.	.	.	.	.	.		T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														S	S	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	2002	.	.	.	.	.	.	.	2010	.	.	.	.	.	.	.	.	.	2020									.	.	.	.	.																								.	.	.	.	2030	.	.	.	.	.	.	.	.	.	2040	.	.	.	.	.	.	.	.	.	2050

	85											.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence	G	.	.	.	.	.	.	.	.	.	.	E	M	G	C	F	I	V	E	K	H	L	N	R	F	I	E	G	K	C	V	S	D	I	K	L	I	H	D	Q	M	L	S	A	T	L	Y	Y	S	G	S	G	G	L	V	M	N	T	I	S	C	V	D	L	A	L	W	D	L	F	G	K	V	V	G	L	P	V	Y	K
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.
Template Sequence	F	P	L	P	D	Y	T	E	E	T	L	S	S	A	I	L	I	I	K	E	Q	L	L	P	L	L	A	Q	R	K	I	R	K	P	E	E	I	Q	E	L	F	S	W	I	Q	G	N	E	.	.	.	.	.	.	.	.	M	A	K	A	A	V	E	L	A	V	W	D	A	F	A	K	M	E	K	R	S	L	A	K
Template Known Secondary structure		S	S	T	T	S	S	S													T	T										S	S	T	T						T	T	T	S		S			.	.	.	.	.	.	.	.																		T	T	S	B
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.
Template SS confidence
	2051	.	.	.	.	.	.	.	.	2060	.	.	.	.	.	.	.	.	.	2070	.	.	.	.	.	.	.	.	.	2080	.	.	.	.	.	.	.	.	.	2090	.	.	.	.	.	.	.	.									.	2100	.	.	.	.	.	.	.	.	.	2110	.	.	.	.	.	.	.	.	.	2120	.	.

	155	.	.	.	.	160	.	.	.	.	.	.	.	.	.				170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence	L	L	G	G	A	V	R	D	E	I	Q	F	Y	A	T	.	.	.	G	A	R	P	D	L	A	K	E	M	G	F	I	G	G	K	M	P	T	H	W	G	P	H	D	G	D	A	G	I	R	K	D	A	A	M	V	A	D	M	R	E	K	C	G	E	D	F	W	L	M	L	D	C	W	M	S	Q	D	V	N	Y
Query Conservation																.	.	.
Alig confidence					.											.	.	.																													.	.																.
Template Conservation					.																																										.	.																.
Template Sequence	M	I	G	A	.	T	K	E	S	I	K	V	G	V	S	I	G	L	Q	Q	N	V	E	T	L	L	Q	L	V	N	Q	Y	V	D	Q	G	Y	E	R	V	K	L	K	I	A	P	.	.	N	K	D	I	Q	F	V	E	A	V	R	K	S	F	P	.	K	L	S	L	M	A	D	A	N	S	A	Y	N	R	E	D
Template Known Secondary structure		T	T		.			S				B								S																T									B	T	.	.	T	B	S									T	T		T	.	T	S							T	T				G	G	G
Template Predicted Secondary structure					.																																										.	.																.
Template SS confidence
	2123	.	.	.		.	.	.	2130	.	.	.	.	.	.	.	.	.	2140	.	.	.	.	.	.	.	.	.	2150	.	.	.	.	.	.	.	.	.	2160	.	.	.	.	.	.	.			.	.	2170	.	.	.	.	.	.	.	.	.	2180	.	.		.	.	.	.	.	.	.	2190	.	.	.	.	.	.	.	.

	232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence	A	T	K	L	A	H	A	C	A	P	Y	N	L	K	W	I	E	E	C	L	P	P	Q	Q	Y	E	S	Y	R	E	L	K	R	N	A	P	V	G	M	M	V	T	S	G	E	H	H	G	T	L	Q	S	F	R	T	L	S	E	.	T	G	I	D	I	M	Q	P	D	V	G	W	C	G	G	L	T	T	L	V	E
Query Conservation																																																											.
Alig confidence					.																														.	.																							.
Template Conservation					.																														.	.
Template Sequence	F	L	L	L	.	K	E	L	D	Q	Y	D	L	E	M	I	E	Q	P	F	G	T	K	D	F	V	D	H	A	W	L	Q	K	Q	.	.	L	K	T	R	I	C	L	D	E	N	I	R	S	V	K	D	V	E	Q	A	H	S	I	G	S	C	R	A	I	N	L	K	L	A	R	V	G	G	M	S	S	A	L	K
Template Known Secondary structure					.					T	T	T		S						S		S	S		S								T	T	.	.		S	S						T	T			S											T			S						T	G	G	G	T	S
Template Predicted Secondary structure					.																														.	.
Template SS confidence
	2199	2200	.	.		.	.	.	.	.	.	.	2210	.	.	.	.	.	.	.	.	.	2220	.	.	.	.	.	.	.	.	.	2230	.			.	.	.	.	.	.	.	.	2240	.	.	.	.	.	.	.	.	.	2250	.	.	.	.	.	.	.	.	.	2260	.	.	.	.	.	.	.	.	.	2270	.	.	.	.	.

	311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence	I	A	A	I	A	K	S	R	G	Q	L	V	V	P	H	G	S	.	S	V	Y	S	H	H	A	V	I	T	F	T	N	T	P	F	S	E	F	L	M	T	S	P	D	C	S	T	M	R	P	Q	F	D	P	I	L	L	N	E	P	V	P	V	N	G	R	I	H	K	S	V	L	D	K	P	G	F	G	V	E	L
Query Conservation																		.
Alig confidence																		.																								.																										.	.
Template Conservation																																										.																										.	.
Template Sequence	I	A	E	Y	C	A	L	N	E	I	L	V	W	C	G	G	M	L	E	A	G	V	G	R	A	H	N	I	A	L	A	A	R	N	E	F	V	F	P	G	D	.	I	S	A	S	N	R	F	F	A	E	D	I	V	T	P	A	F	E	L	N	Q	G	R	L	K	.	.	V	P	T	N	E	G	I	G	V	T	L
Template Known Secondary structure								T	T																							T	S	S	S			S		B	S	.				G	G	G	T	B	S	S		S	B	S	S						S	S				.	.				S	S	B	T	S			B
Template Predicted Secondary structure																																										.																										.	.
Template SS confidence
	2276	.	.	.	2280	.	.	.	.	.	.	.	.	.	2290	.	.	.	.	.	.	.	.	.	2300	.	.	.	.	.	.	.	.	.	2310	.	.	.	.	.	.		.	.	.	2320	.	.	.	.	.	.	.	.	.	2330	.	.	.	.	.	.	.	.	.	2340	.			.	.	.	.	.	.	.	.	2350	.	.

	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	R	D	C	N	L	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence	D	L	K	V	L	K	K	Y
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
	2353	.	.	.	.	.	.	2360

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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