Job Description P77215 Confidence 100.00% Date Thu Jan 5 12:26:27 GMT 2012 Rank 91 Aligned Residues 325 % Identity 14% Template c1kkoB_ PDB info PDB header:lyase Chain: B: PDB Molecule:3-methylaspartate ammonia-lyase; PDBTitle: crystal structure of citrobacter amalonaticus2 methylaspartate ammonia lyase Resolution 1.33 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.					.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.			.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.												.												.	.
Query SS confidence																																								.	.	.	.												.												.	.
Query Sequence		K	I	K	Q	V	R	A	W	F	T	G	G	A	T	A	E	K	G	A	G	G	G	D	Y	H	D	Q	G	A	N	H	W	I	D	D	H	I	A	.	.	.	.	T	P	M	S	K	Y	R	D	Y	E	Q	.	S	R	Q	S	F	G	I	N	V	L	G	.	.	T	L	V	V	E	V	E	A	E	N	G	Q	T
Query Conservation																																								.	.	.	.												.												.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.												.												.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	K	Q	A	L	F	T	A	G	Y	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	F	Y	F	D	D	Q	Q	A	I	K	N	G	A	G	H	D	G	F	I	Y	T	G	D	P	V	T	P	G	F	T	S	V	R	Q	A	G	E	C	V	S	V	Q	L	I	L	E	N	G	A	V
Template Known Secondary structure		B												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		T	T				S				S	T	T		S	S	S														T	T	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.																		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
		78	.	80	.	.	.	.															.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.
Query Sequence		G	F	A	V	S	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	M	G	C	F	I	V	E	K	H	L	N	R	F	I	E	G	K	C	V	S	D	I	K	L	I	H	D	Q	M	L	S	A	T	L	Y	Y	S	G	S	G	G	L	V	M	N	T	I	.	S	C	V	D	L	A	L	W	D
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.				.
Template Conservation																																																																	.	.	.	.
Template Sequence		A	V	G	D	C	A	A	V	Q	Y	S	G	A	G	G	R	D	P	L	F	L	A	E	H	F	I	P	F	L	N	D	H	I	K	P	L	L	E	G	R	D	V	D	A	F	L	P	N	A	R	F	F	D	K	L	R	I	D	G	N	L	L	H	.	.	.	.	T	A	V	R	Y	G	L	S	Q	A	L	L	D
Template Known Secondary structure										T	T	T	T	S	T	T																		T					T	T		B		S		S													T	T					.	.	.	.
Template Predicted Secondary structure																																																																	.	.	.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.						160	.	.	.	.	.	.	.	.	.	170	.	.							.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.								.	200	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.														.	.	.	.	.	.																											.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.														.	.	.	.	.	.																											.	.	.	.	.	.	.
Query Sequence		L	F	G	K	V	V	G	L	P	V	Y	K	L	L	G	G	A	.	.	.	.	.	V	R	D	E	I	Q	F	Y	A	T	G	A	R	.	.	.	.	.	.	P	D	L	A	K	E	M	G	F	I	G	G	K	M	P	T	H	W	G	P	H	D	G	D	A	G	.	.	.	.	.	.	.	I	R	K	D	A	A
Query Conservation																			.	.	.	.	.														.	.	.	.	.	.																											.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.														.	.	.	.	.	.																											.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	A	L	A	S	G	R	L	K	T	E	V	V	C	D	E	W	Q	L	P	C	V	P	E	A	I	P	L	F	G	Q	S	G	D	D	R	Y	I	A	V	D	K	X	I	L	K	G	V	D	V	L	P	H	A	L	I	N	N	V	E	E	K	L	G	F	K	G	E	K	L	R	E	Y	V	R	W	L	S	D
Template Known Secondary structure								T												T															T	T		T	T									T	T		S					T	T										T	T	S
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.							230	.	.	.	.	.	.	.	.	.	240	.	.	.	.				.	.	.	.	.	250	.	.	.	.	.					.	.	.	.	260	.	.	.	.	.	.	.				.
Predicted Secondary structure																											.	.	.	.	.	.																.	.	.												.	.	.	.													.	.	.
Query SS confidence																											.	.	.	.	.	.																.	.	.												.	.	.	.													.	.	.
Query Sequence		M	V	A	D	M	R	E	K	C	G	E	D	F	W	L	M	L	D	C	W	M	S	Q	D	V	.	.	.	.	.	.	N	Y	A	T	K	L	A	H	A	C	A	P	Y	N	L	.	.	.	K	W	I	E	E	C	L	P	P	Q	Q	.	.	.	.	Y	E	S	Y	R	E	L	K	R	N	A	P	.	.	.	V
Query Conservation																											.	.	.	.	.	.																.	.	.												.	.	.	.													.	.	.
Alig confidence																											.	.	.	.	.	.																.	.	.												.	.	.	.													.	.	.
Template Conservation
Template Sequence		R	I	L	S	L	R	S	S	P	R	Y	H	P	T	L	H	I	D	V	Y	G	T	I	G	L	I	F	D	X	D	P	V	R	C	A	E	Y	I	A	S	L	E	K	E	A	Q	G	L	P	L	Y	I	E	G	P	V	D	A	G	N	K	P	D	Q	I	R	X	L	T	A	I	T	K	E	L	T	R	L	G	S
Template Known Secondary structure								S	S	T	T										T	T						T	T	T												T	T	G	G	G	T	T	S											S	S																			T
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.			.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																							.																																								.	.
Query SS confidence																							.																																								.	.
Query Sequence		G	M	M	V	T	S	G	E	H	H	G	T	L	Q	S	F	R	T	L	S	E	.	T	G	I	D	I	M	Q	P	D	V	G	W	C	G	G	L	T	T	L	V	E	I	A	A	I	A	K	S	R	G	Q	L	V	V	P	H	G	S	S	.	.	V	Y	S	H	H	A	V	I	T	F	T	N	T	P	F	S	E
Query Conservation																							.																																								.	.
Alig confidence																							.																																								.	.
Template Conservation
Template Sequence		G	V	K	I	V	A	D	E	W	C	N	T	Y	Q	D	I	V	D	F	T	D	A	G	S	C	H	X	V	Q	I	K	T	P	D	L	G	G	I	H	N	I	V	D	A	V	L	Y	C	N	K	H	G	X	E	A	Y	Q	G	G	T	C	N	E	T	E	I	S	A	R	T	C	V	H	V	A	L	A	A	R	P
Template Known Secondary structure									T	T			S										T	T			S						G	G	G	G	S	S	T													T	T									T	T	S
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
		346	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	M	T	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	R	X	L	I
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		381	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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