Job Description P62723 Confidence 3.24% Date Thu Jan 5 12:07:48 GMT 2012 Rank 70 Aligned Residues 156 % Identity 16% Template c3k07A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:cation efflux system protein cusa; PDBTitle: crystal structure of cusa Resolution 3.52 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	Q	H	R	T	L	W	H	F	I	P	G	L	A	L	S	A	V	I	T	G	V	A	L	W	G	G	S	I	P	A	V	A	G	A	G	F	S	A	L	T	L	A	I	L	L	G	M	V	L	G	N	T	I	Y	P	H	I	W	K	S	C	D	G	G	V	L	F	A	K	Q	Y	L	L	R	L	G	I	I
Query Conservation
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	L	E	R	A	N	H	K	L	K	L	M	V	P	M	T	L	M	I	I	F	V	L	L	Y	L	A	F	R	R	V	G	E	A	L	L	I	I	S	S	V	P	F	A	L	V	G	G	I	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	W
Template Known Secondary structure													T																		S										T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		863	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.																											.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.											.	.	.	.	.	.	130	.	.	.	.												.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Y	G	F	R	L	T	F	S	Q	I	A	D	V	G	I	S	G	I	I	I	D	V	L	T	L	S	S	T	F	L	L	A	C	F	L	G	.	.	.	.	.	.	.	.	.	.	Q	K	V	F	G	L	D	K	H	T	S	.	.	.	.	.	.	.	.	.	.	.	W	L	I	G	A	G	S	S	I	C	G
Query Conservation																																							.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.																								.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.
Template Sequence		W	M	G	F	H	L	S	V	A	T	G	T	.	.	G	F	I	A	L	A	G	V	A	A	E	F	G	V	V	M	L	M	Y	L	R	H	A	I	E	A	V	P	S	L	N	N	P	Q	T	F	S	E	Q	K	L	D	E	A	L	Y	H	G	A	V	L	R	V	R	P	K	A	M	T	V	A	V	I	I	A	G
Template Known Secondary structure			T	T					T	T				.	.																											S	S	G	G	G		S	S	S	S		S	T	T	T							T	T	T	T	T														T
Template Predicted Secondary structure														.	.
Template SS confidence
		917	.	.	920	.	.	.	.	.	.	.	.			.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		A	A	A	V	L	A	T	E	P	V	V	K	A	E	A	S	K	V	T	V	A	V	A	T	V	V	I	F	G	T	.	V	A	I	F	L	Y	P	A	I	Y	P	L	M	S	Q	W	F
Query Conservation																																.
Alig confidence																																.															.	.
Template Conservation																																															.	.
Template Sequence		L	L	P	I	L	W	G	T	G	A	G	S	E	V	M	S	R	I	A	A	P	M	I	G	G	M	I	T	A	P	L	L	S	L	F	I	I	P	A	A	Y	K	L	M	W	.	.	L
Template Known Secondary structure		T	S							S	S	S																																			.	.
Template Predicted Secondary structure																																															.	.
Template SS confidence
		995	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.			1040

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions