Job Description P76508 Confidence 2.83% Date Thu Jan 5 12:23:47 GMT 2012 Rank 95 Aligned Residues 44 % Identity 27% Template c2o8kA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:rna polymerase sigma factor rpon; PDBTitle: nmr structure of the sigma-54 rpon domain bound to the-242 promoter element Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		23	.	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.							.	.	.	.	.							.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																.	.							.	.	.	.	.	.						.	.	.	.	.	.
Query SS confidence																.	.							.	.	.	.	.	.						.	.	.	.	.	.
Query Sequence		D	Q	L	L	T	A	L	R	A	L	L	L	S	R	.	.	K	N	P	F	G	D	.	.	.	.	.	.	I	K	L	D	G	.	.	.	.	.	.	T	V	Q	K	A	L	E	N	L	G	L	G	E	A	A	K	R	N	V
Query Conservation																.	.							.	.	.	.	.	.						.	.	.	.	.	.
Alig confidence																.	.							.	.	.	.	.	.						.	.	.	.	.	.
Template Conservation
Template Sequence		G	E	L	M	K	L	I	K	E	I	V	E	N	E	D	K	R	K	P	Y	S	D	Q	E	I	A	N	I	L	K	E	K	G	F	K	V	A	R	R	T	V	A	K	Y	R	E	M	L	G	I	P	S	S	R	E	R	R	I
Template Known Secondary structure		S	T	T									T	T	S		T	T	S															T																T		S		S
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions