Job Description P0AFB8 Confidence 98.78% Date Thu Jan 5 11:25:50 GMT 2012 Rank 196 Aligned Residues 223 % Identity 21% Template c1s3sA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:transitional endoplasmic reticulum atpase (ter PDBTitle: crystal structure of aaa atpase p97/vcp nd1 in complex with2 p47 c Resolution 2.90 Å

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		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.												.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	Q	Q	P	R	N	V	Q	L	N	G	P	T	T	D	I	I	G	E	A	P	A	M	Q	D	V	F	R	I	I	G	R	.	.	.	.	.	.	.	.	.	.	.	L	S	R	S	S	I	S	V	L	I	N	G	E	S	G	T	G	K	E	L	V	A	H	A	L	H	R	H	S	P	R	A	K	A	P	F	I
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Conservation																																																																									.	.	.
Template Sequence		R	E	D	E	E	E	S	L	N	E	V	G	Y	D	D	V	G	G	C	R	K	Q	L	A	Q	I	K	E	M	V	E	L	P	L	R	H	P	A	L	F	K	A	I	G	V	K	P	P	R	G	I	L	L	Y	G	P	P	G	T	G	K	T	L	I	A	R	A	V	A	N	E	.	.	.	T	G	A	F	F	F
Template Known Secondary structure				T	T				T	T	S			G	G	G			S																			T	T																		S	T	T	S	S												.	.	.		T
Template Predicted Secondary structure																																																																									.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.				.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.												.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	N	M	A	A	I	P	K	D	L	I	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	N	T	I	R	Q	G	R	F	E	Q	A	D	G	G	T	L	F	L	D	E	I	G	D	M	.	.	.	.	.	.	.	.	.	.	.	P	L	D	V	Q	T	R	L	L	R	V	L	A	D	G	Q	F	Y
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.																																																																.	.	.	.
Template Sequence		L	I	N	G	.	.	.	.	.	.	.	.	.	P	E	I	M	S	K	L	A	G	E	S	E	S	N	L	R	K	A	F	E	E	A	E	K	N	A	P	A	I	I	F	I	D	E	L	D	A	I	A	P	K	R	E	K	T	H	G	E	V	E	R	R	I	V	S	Q	L	L	T	L	M	D	G	.	.	.	.
Template Known Secondary structure						.	.	.	.	.	.	.	.	.					T	S		T	T																T		S							T	G	G	G	T				S	S	S				T	T															.	.	.	.
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.																																																																.	.	.	.
Template SS confidence
		268	.	270	.										.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.				.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		R	V	G	G	Y	A	P	V	K	V	D	V	R	I	I	A	A	T	H	Q	N	.	.	.	L	E	Q	R	V	Q	E	G	K	F	R	E	D	L	F	H	R	L	N	V	I	R	V	H	L	P	P	L	R	E	R	R	E	D	I	P	R	L	A	R	H	F	L	Q	V	A	A	R	E	L	G	V	E	A	K	L
Query Conservation																							.	.	.
Alig confidence		.	.	.	.	.																	.	.	.													.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																																.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	L	K	Q	R	A	H	V	I	V	M	A	A	T	N	R	P	N	S	I	D	P	A	L	R	R	F	G	R	F	D	R	.	.	.	.	.	.	.	E	V	D	I	G	I	P	D	A	T	G	R	L	.	.	.	.	.	.	.	.	.	.	.	.	E	I	L	Q	I	H	T	K	N	M	K	L
Template Known Secondary structure		.	.	.	.	.			G	G	G									S		G	G	G	S		G	G	G	T	S	T	T	S	S			.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.						T	T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.																																.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
							335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.								.	.	.	.	370	.	.	.	.	.	.	.	.													.	380	.	.	.	.	.	.	.	.	.	390
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.																					.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	H	P	E	T	E	A	A	L	T	R	L	A	W	P	G	N	V	R	Q	L	E	N	T	C	R	W	L	T	V	M	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	Q	E	V	L	I	Q	D	L	P	G	E	L	F	E
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	D	V	D	L	E	Q	V	A	N	E	T	H	G	H	V	G	A	D	L	A	A	L	C	S	E	A	A	L	Q	A	I	R	K	K	M	D	L	I	D	L	E	D	E	T	I	D	A	E	V	M	N	S	L	A	V	T	M	D	D	F	R	W	A	L	S	Q
Template Known Secondary structure			T	T								T	T			S																						T	T	T	T	T		S	S				B
Template Predicted Secondary structure
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions