Job Description P0AFB8 Confidence 98.99% Date Thu Jan 5 11:25:50 GMT 2012 Rank 177 Aligned Residues 217 % Identity 26% Template c1iy2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent metalloprotease ftsh; PDBTitle: crystal structure of the ftsh atpase domain from thermus2 thermophilus Resolution 3.20 Å

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		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.											.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	Q	Q	P	R	N	V	Q	L	N	G	P	T	T	D	I	I	G	E	A	P	A	M	Q	D	V	F	R	I	I	G	R	L	.	.	.	.	.	.	.	.	.	.	S	R	S	S	I	S	V	L	I	N	G	E	S	G	T	G	K	E	L	V	A	H	A	L	H	R	H	S	P	R	A	K	A	P	F	I	A
Query Conservation																																			.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.																												.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		R	A	R	V	L	T	E	A	P	K	V	T	F	K	D	V	A	G	A	E	E	A	K	E	E	L	K	E	I	V	E	F	L	K	N	P	S	R	F	H	E	M	G	A	R	I	P	K	G	V	L	L	V	G	P	P	G	V	G	K	T	H	L	A	R	A	V	A	G	E	.	.	.	A	R	V	P	F	I	T
Template Known Secondary structure						B								G	G	G	S	S	S																								T	T													T	T	S	S												.	.	.	T	T
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.				.	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.				.	.	.	.	.	.	.	.	240	.	.	.	.							.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																																							.	.	.														.	.	.	.	.	.
Query SS confidence																																							.	.	.														.	.	.	.	.	.
Query Sequence		L	N	M	A	A	I	P	K	D	L	I	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	N	T	I	R	Q	G	R	F	E	Q	A	.	.	.	D	G	G	T	L	F	L	D	E	I	G	D	M	.	.	.	.	.	.	P	L	D	V	Q	T	R	L	L	R	V	L	A	D	G	Q	F	Y	R	V	G
Query Conservation																																							.	.	.														.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.												.	.	.														.	.	.	.	.	.															.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.
Template Sequence		A	S	G	S	D	F	V	E	M	F	V	G	V	G	.	.	.	.	.	.	.	.	.	.	.	.	A	A	R	V	R	D	L	F	E	T	A	K	R	H	A	P	C	I	V	F	I	D	E	I	D	A	V	G	R	K	N	D	E	R	E	Q	T	L	N	Q	L	L	V	E	M	D	G	.	.	.	.	.	.	.
Template Known Secondary structure										S	T	T	T			.	.	.	.	.	.	.	.	.	.	.	.													T	S		S							T																							T	T	.	.	.	.	.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.													.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.				.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure																				.	.	.
Query SS confidence																				.	.	.
Query Sequence		G	Y	A	P	V	K	V	D	V	R	I	I	A	A	T	H	Q	N	.	.	.	L	E	Q	R	V	Q	E	G	K	F	R	E	D	L	F	H	R	L	N	V	I	R	V	H	L	P	P	L	R	E	R	R	E	D	I	P	R	L	A	R	H	F	L	Q	V	A	A	R	E	L	G	V	E	A	K	L	L	H	P
Query Conservation																				.	.	.
Alig confidence		.	.																	.	.	.													.	.	.	.	.	.	.															.	.	.	.							.	.	.	.	.	.	.	.
Template Conservation		.	.																																.	.	.	.	.	.	.															.	.	.	.							.	.	.	.	.	.	.	.
Template Sequence		.	.	F	E	K	D	T	A	I	V	V	M	A	A	T	N	R	P	D	I	L	D	P	A	L	L	R	P	G	R	F	D	R	.	.	.	.	.	.	.	Q	I	A	I	D	A	P	D	V	K	G	R	E	Q	.	.	.	.	I	L	R	I	H	A	.	.	.	.	.	.	.	.	R	G	K	P	L	A	E	D
Template Known Secondary structure		.	.			T	T										S		T	T	S	S						S	T	T	S	S			.	.	.	.	.	.	.															.	.	.	.							.	.	.	.	.	.	.	.	T	T	S		B		T	T
Template Predicted Secondary structure		.	.																																.	.	.	.	.	.	.															.	.	.	.							.	.	.	.	.	.	.	.
Template SS confidence
				289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.								320	.	.	.	.	.	.	.	.	.	330	.	.	.					.	.	.	.	.	.									340	.	.	.	.	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.				.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure															.																	.	.	.
Query SS confidence															.																	.	.	.
Query Sequence		E	T	E	A	A	L	T	R	L	A	W	P	G	.	N	V	R	Q	L	E	N	T	C	R	W	L	T	V	M	A	.	.	.	A	G	Q	E	V	L	I	Q	D	L	P	G	E	L
Query Conservation															.																	.	.	.
Alig confidence											.				.																	.	.	.
Template Conservation											.
Template Sequence		V	D	L	A	L	L	A	K	R	.	T	P	G	F	V	G	A	D	L	E	N	L	L	N	E	A	A	L	L	A	A	R	E	G	R	R	K	I	T	M	K	D	L	E	E	A	A
Template Known Secondary structure										T	.		T	T																				T	T			S	B									T
Template Predicted Secondary structure											.
Template SS confidence
		348	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions