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Job DescriptionP37329
Confidence99.68%DateThu Jan 5 11:55:15 GMT 2012
Rank51Aligned Residues223
% Identity17%Templatec3csgA_
PDB info PDB header:de novo protein, sugar binding proteinChain: A: PDB Molecule:maltose-binding protein monobody ys1 fusion; PDBTitle: crystal structure of monobody ys1(mbp-74)/maltose binding2 protein fusion complex
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30....... ..40.........50.........60..... ....70.........80.........90.........100.
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Query Sequence  KITVFAAASL. TNAMQDIATQFKKEKGVDVVSSFASSST. . LARQIEAGAPADLFISADQKWMDYAVDKKAIDTATR. . .
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Template Sequence  KLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFW. AHDRFGGYAQSGLLAEITPDKA
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   6...10.........20.........30.........40.........50.........60.. .......70.........80....
 
   102.......110.........120.........130 .........140.........150......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . QTLLGNSLVVVAPKASVQKDFTIDSKTNW. . . . TSLLNGGRLAVGDPEHVPAGIYAKEA
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Template Sequence  FQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLL. . PNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIA
Template Known Secondary structure  TTB
TTTT
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TTT
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SBGGGTTT



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   85....90.........100.........110.........120.. .......130.........140.........150.........160..
 
   157..160.........170... ......180.........190.........200........
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Query Sequence  LQKLGAWDTLSPKLAPA. . . . . . . . . . . . . . . . . . . . . . . . . . . . EDVRGALALVERNEAPLGIVYGSDAVASKGVKVVA
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Template Sequence  ADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNY
Template Known Secondary structure  TT

SSSSSSTTSS
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   163......170.........180.........190.........200.........210.........220.........230.........240..
 
   209210 .........220.........230.. ...... .240.........250...
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Query Sequence  TF. . . . . . . . PEDSHKKVEYPVAVVEGHNNAT. VKAFYD. YLKGPQAAEIFKRYG
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Template Sequence  GVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDK
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BTT
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   243......250.........260.........270.........280.........290.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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