 |
Job Description | P32143 | Confidence | 97.64% | Date | Thu Jan 5 11:49:29 GMT 2012 |
Rank | 64 | Aligned Residues | 135 |
% Identity | 12% | Template | c3nm3D_ |
PDB info |
PDB header:transferase | Chain: D: PDB Molecule:thiamine biosynthetic bifunctional enzyme; |
PDBTitle: the crystal structure of candida glabrata thi6, a bifunctional enzyme2 involved in thiamin biosyhthesis of eukaryotes
|
Resolution | 3.10 Å |
|
 |
  |   |
141 | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | |
|
|
|
. | . | . | . | . | . | . | 170 | . | . | . | . | . | |
|
. | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | |
|
. | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
| . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |
|
| . | . |
|  |  |  |  |
|  |  |  |  |  |  |  |
|
|
|
|
| . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | G | A | K | K | A | F | T | L | A | R | Q | A | G | V | M | T | V | L | D | G | D | . |
. |
. |
. |
I | T | P | Q | D | I | S | E | L | V | A | L | S | . |
. |
D | H | A | A | F | S | E | P | G | L | A | R | L | T | G | V | K | E | . |
. |
M | A | S | A | L | K | Q | A | Q | T | L | T | N | G | H | V | Y | V | T |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   | . | . |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |   |   |
|   |   |   |
|   |
|
|
|
|
|
|
|
|
|
|   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |
|
|
|
|
|
|   |   |
|
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |   |   |   |
|
|
|
|
|
Template Sequence |   |
E | M | L | K | A | A | I | R | A | Y | N | D | V | K | R | P | I | V | F | D | P | V | G | A | T | E | T | R | L | L | L | N | N | K | L | L | T | F | G | Q | F | S | C | I | K | G | N | S | S | E | I | L | G | L | A | E | L | S | N | E | L | L | I | Q | A | T | K | I | V | A | F | K | Y | K | T | V | A | V | C | T |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | T | T | S | S |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
321 | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 |
  |
  |   |
213 | . | . | . | . | . | . | 220 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | |
|
|
. | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | G | S | A | G | C | D | W | L | E | N | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | G | R | Q | H | Q | P | A | F | K | V | D | V | V | D | T | T | G | A | G | D | V | F | H | G | A | L | A | V | A | L | A | . |
. |
. |
T | S | G | D | L | A | E | S | V | R | F | A | S | G | V | A | A | L | K | C | T | R |
Query Conservation |   |
  |
|   |   |
|   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|
|
|
|   |
|   |
|
|   |   |   |   |
|   | . | . | . |   |
|   |   |   |   |   |
|   |   |   |
|   |   |   |
|
|   |   |
|   |   |
Alig confidence |   |
|
|
|
| . | . |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
| . | . |   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |
|
|
|   |
|
|
|   |
|
|   |   |   |   |   |   |
|   |   |   |
|
|   |   |
|   |   |   |   |   |   |
|
|
|   |
Template Sequence |   |
G | E | F | D | . |
. |
F | I | A | D | G | T | I | E | G | K | Y | S | L | S | K | G | T | N | G | T | S | V | E | D | I | P | C | V | A | V | E | A | G | P | I | G | C | S | L | G | S | T | I | A | C | M | I | G | G | Q | P | S | E | G | N | L | F | H | A | V | V | A | G | V | M | L | Y | K | A | A | G | K | I |
Template Known Secondary structure |   |
S | S | S |  | . | . |  |  |  |  |
|
| G | G | G | B |
|
| S | S | S |
| S | S | S |
|
| G | G | G | S |
|  |  |  |  | B |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
| T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  | . | . |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
417 | . | . | 420 | |
|
. | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|