Job Description P32143 Confidence 100.00% Date Thu Jan 5 11:49:29 GMT 2012 Rank 9 Aligned Residues 296 % Identity 22% Template c3in1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh; PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli Resolution 2.15 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		I	R	V	A	C	V	G	I	T	V	M	D	R	I	Y	Y	.	V	E	G	L	P	T	E	S	G	K	Y	V	A	R	N	Y	T	E	V	G	G	G	P	A	A	T	A	A	V	A	A	A	R	L	G	A	Q	V	D	F	I	G	R	V	G	D	D	D	T	G	N	S	L	L	A	E	L	E	S	W	G	V	N
Query Conservation																		.
Alig confidence																		.
Template Conservation
Template Sequence		L	D	V	I	C	I	G	A	A	I	V	D	I	P	L	Q	P	V	S	K	N	I	F	D	V	D	S	Y	P	L	E	R	I	A	X	T	T	G	G	D	A	I	N	E	A	T	I	I	S	R	L	G	H	R	T	A	L	X	S	R	I	G	K	D	A	A	G	Q	F	I	L	D	H	C	R	K	E	N	I	D
Template Known Secondary structure								S													S	S	G	G	G	S	S					S								S												T	T											S	S														T		B
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.							.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																	.																									.	.	.	.	.	.
Query SS confidence																																	.																									.	.	.	.	.	.
Query Sequence		T	R	Y	T	K	R	Y	N	Q	A	K	S	S	Q	S	A	I	M	V	D	T	K	G	E	R	I	I	I	N	Y	P	.	S	P	D	L	L	P	D	A	E	W	L	E	E	I	D	F	S	Q	W	D	V	V	L	A	.	.	.	.	.	.	D	V	R	W	H	D	G	A	K	K	A	F	T	L	A	R	Q	A
Query Conservation																																	.																									.	.	.	.	.	.
Alig confidence																																	.																									.	.	.	.	.	.
Template Conservation
Template Sequence		I	Q	S	L	K	Q	D	V	S	I	D	T	S	I	N	V	G	L	V	T	E	D	G	E	R	T	F	V	T	N	R	N	G	S	L	W	K	L	N	I	D	D	V	D	F	A	R	F	S	Q	A	K	L	L	S	L	A	S	I	F	N	S	P	L	L	D	G	K	A	L	T	E	I	F	T	Q	A	K	A	R
Template Known Secondary structure			T	T					T	T	S											T	T	S								T	T	S							G	G	G			G	G	G	G	G	G		S								T	T	S	T	T	S														T	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		154	.	.	.	.	.	160						.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.
Query SS confidence									.	.	.	.	.
Query Sequence		G	V	M	T	V	L	D	.	.	.	.	.	G	D	I	T	P	Q	D	I	S	E	L	V	A	L	S	D	H	A	A	F	S	E	P	G	L	A	R	L	T	G	V	K	E	M	A	S	A	L	K	Q	A	Q	T	L	T	N	G	H	V	Y	V	T	Q	G	S	A	G	C	D	W	L	E	N	G	G	R	Q	H
Query Conservation									.	.	.	.	.
Alig confidence									.	.	.	.	.
Template Conservation
Template Sequence		Q	X	I	I	C	A	D	X	I	K	P	R	L	N	E	T	L	D	D	I	C	E	A	L	S	Y	V	D	Y	L	F	P	N	F	A	E	A	K	L	L	T	G	K	E	T	L	D	E	I	A	D	C	F	L	A	C	G	V	K	T	V	V	I	K	T	G	K	D	G	C	F	I	K	R	G	D	X	T	X	K
Template Known Secondary structure		T											S	S	S			G	G	G	G					T	T		S					B												S											T	T		S							G	G	G							T	T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		229	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		Q	P	.	A	F	K	V	D	V	V	D	T	T	G	A	G	D	V	F	H	G	A	L	A	V	A	L	A	T	S	G	D	L	A	E	S	V	R	F	A	S	G	V	A	A	L	K	C	T	R	P	G	G	R	A	G	I	P	D	C	D	Q	T	R	S	F	L	S	L	F
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		V	P	A	V	A	G	I	T	A	I	D	T	I	G	A	G	D	N	F	A	S	G	F	I	A	A	L	L	E	G	K	N	L	R	E	C	A	R	F	A	N	A	T	A	A	I	S	V	L	S	V	G	A	T	T	G	V	K	N	R	K	L	V	E	Q	L	L	E	E	Y
Template Known Secondary structure						S	S				S			T	T															T	T																			T	S	S	S	S	S	S	S		S	S	S									T
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions