|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | |
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  | . | . | . | . | . | . |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
M | N | Y | I | Y | S | A | T | T | N | S | F | Y | P | L | E | M | K | E | D | Y | T | Q | A | G | S | W | P | D | D | . |
. |
. |
. |
. |
. |
A | V | E | V | D | E | Q | V | Y | I | E | F | S | G | L | P | P | K | G | K | I | R | I | A | G | E | N | G | F | P | A | W | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
|   |   |   |
|
|   |   |   |   |
|
|
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |
|   |
| . | . | . | . | . | . |
|
|   |
|
|
|
|   |   |   |   |
|   |   |   |   |   |   |
|
|   |
|   |   |   |   |   |
|   |
|   |
|
| . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
|
|
|
|
|   |   | . | . | . |
|   |
|
|   |   | . | . | . |   |   |   |   |
|
|
|
|
|
|   |
|   |
|   |   |
|
|   |
|   |   |   |
|
|   |   |   |
|
|
|   |   |
|   |
|
|
|
|
|
|
|
|   |
|
|
|   |
|   |
|
|
|   |   |
|   |
|
|
|   |
Template Sequence |   |
I | A | I | L | Y | D | P | . |
. |
. |
G | M | F | P | A | L | . |
. |
. |
L | V | A | R | N | G | G | V | P | Q | L | G | N | L | T | K | H | L | Q | V | F | R | D | H | L | I | N | Q | I | P | D | K | S | F | P | G | V | G | V | I | D | F | E | S | W | R | P | I | F | R | Q | N | W | A | S | L | Q | P | Y | K | K |
Template Known Secondary structure |   |
 |  |  |  |  | S |
| . | . | . | S |
|
|
|  |  | . | . | . |
|
|  |  | T | T | S | S | G | G | G |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| T | T |
|
| S |  |  |  |  |  |
|
| S |
|
| S | S | G | G | G |
|
| G | G | G |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
| . | . | . |
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
51 | . | . | . | . | . | . | |
|
|
. | . | 60 | . | . | . | |
|
|
. | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . |
  |
  |   |
|
|
|
|
|
|
|
|
64 | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
. | . | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
E | I | P | P | P | T | H | E | E | Q | I | A | A | A | E | L | K |
Query Conservation |   |
. | . | . | . | . | . | . | . |
|   |
|
|
|
|   |
|
|
|   |   |   |
|   |   |   |
Alig confidence |   |
. | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|
|
|   |   |   |
|
|   |
|   |   |   |   |
|   |   |   |
|
|   |   |
Template Sequence |   |
L | S | V | E | V | V | R | R | E | H | P | F | W | D | D | Q | R | V | E | Q | E | A | K | R | R |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
132 | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . |
  |