Job Description P77538 Confidence 99.86% Date Thu Jan 5 12:30:21 GMT 2012 Rank 139 Aligned Residues 275 % Identity 13% Template c2zshA_ PDB info PDB header:hormone receptor Chain: A: PDB Molecule:probable gibberellin receptor gid1l1; PDBTitle: structural basis of gibberellin(ga3)-induced della2 recognition by the gibberellin receptor Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.										.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.
Query Sequence		M	A	L	P	V	N	K	R	V	P	K	I	L	F	I	L	F	V	V	A	F	C	V	Y	L	V	P	.	.	.	.	.	.	.	.	.	R	V	A	I	N	F	F	Y	Y	P	D	D	K	I	Y	G	P	D	P	W	S	A	E	S	V	E	F	T	A	K	D	G	T	R	L	Q	G	W	F	I	P	S	S	T
Query Conservation																													.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.																		.
Template Conservation																																																							.
Template Sequence		V	N	L	I	E	S	R	T	V	V	P	L	N	T	W	V	L	I	S	N	F	K	V	A	Y	N	I	L	R	R	P	D	G	T	F	N	R	H	L	A	E	Y	L	D	R	K	V	T	A	N	A	N	P	.	V	D	G	V	F	S	F	D	V	L	I	D	R	R	I	N	L	L	S	R	V	Y	R	P	A	Y
Template Known Secondary structure									T	T	S																			B		T	T	S		B									S		B					S	S		.	B	T	T										T	T	T	T
Template Predicted Secondary structure																																																							.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		72	.	.															.	.	.	.	.	80	.	.	.	.	.	.	.	.	.						90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																.
Query Sequence		G	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	A	I	A	T	I	I	H	A	H	G	N	A	G	.	.	.	.	.	N	M	S	A	H	W	P	L	V	S	W	L	P	E	R	.	N	F	N	V	F	M	F	D	Y	R	G	F	G	K	S	K	G	T	P	S	Q	A	G	L	L	D	D
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																.
Template Conservation
Template Sequence		A	D	Q	E	Q	P	P	S	I	L	D	L	E	K	P	V	D	G	D	I	V	P	V	I	L	F	F	H	G	G	S	F	A	H	S	S	A	N	S	A	I	Y	D	T	L	C	R	R	L	V	G	L	C	K	C	V	V	V	S	V	N	Y	R	R	A	P	E	N	P	Y	P	C	A	Y	D	D	G	W	I	A
Template Known Secondary structure		T	T		S	S				T	T	S	T	T					S	S	S										S	T	T	T	S			T	T	B															T	S										T	T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		132	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.																						.	.
Predicted Secondary structure										.																																			.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.																																			.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	Q	S	A	I	N	V	V	.	R	H	R	S	D	V	N	P	Q	R	L	V	L	F	G	Q	S	I	G	G	A	N	I	L	D	V	I	G	R	G	D	R	E	G	.	.	I	R	A	V	I	L	D	S	T	F	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	A
Query Conservation										.																																			.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.																																			.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	N	W	V	N	S	R	S	W	L	K	S	K	K	D	S	K	V	H	I	F	L	A	G	D	S	S	G	G	N	I	A	H	N	V	A	L	R	A	G	E	S	G	I	D	V	L	G	N	I	L	L	N	P	M	F	G	G	N	E	R	T	E	S	E	K	S	L	D	G	K	Y	F	V	T	V	R	D	R	D
Template Known Secondary structure							T		G	G	G			T	T	T	S	S									T															T	T	T										S						S	S									T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.					.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.				.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																																.	.	.	.																										.	.	.
Query SS confidence																																.	.	.	.																										.	.	.
Query Sequence		T	I	A	N	Q	M	I	P	G	S	G	Y	L	L	D	E	S	Y	S	G	E	N	Y	I	A	S	V	S	P	I	.	.	.	.	P	L	L	L	I	H	G	K	A	D	H	V	I	P	W	Q	H	S	E	K	L	Y	S	L	A	.	.	.	K	E	P	K	R	L	I	L	I	P	D	G	E	H	I	D	A	F
Query Conservation																																.	.	.	.																										.	.	.
Alig confidence																																.	.	.	.															.	.										.	.	.
Template Conservation																																																		.	.
Template Sequence		W	Y	W	K	A	F	L	P	E	G	E	D	R	E	H	P	A	C	N	P	F	S	P	R	G	K	S	L	E	G	V	S	F	P	K	S	L	V	V	V	A	G	L	D	L	I	R	D	.	.	W	Q	L	A	Y	A	E	G	L	K	K	A	G	Q	E	V	K	L	M	H	L	E	K	A	T	V	G	F	Y	L
Template Known Secondary structure								S		T	T			T	T	S	T	T	T		T	T	S	T	T	S				T	T												T	T	S	T	T			.	.												T	T									T	T			T	T	T	T	S
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.			.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		261	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		S	D	R	H	G	D	.	.	V	Y	R	E	Q	M	V	D	F	I	L	S
Query Conservation								.	.
Alig confidence								.	.
Template Conservation
Template Sequence		L	P	N	N	N	H	F	H	N	V	M	D	E	I	S	A	F	V	N	A
Template Known Secondary structure		S	S		S
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions