Job Description P77538 Confidence 99.97% Date Thu Jan 5 12:30:21 GMT 2012 Rank 15 Aligned Residues 243 % Identity 16% Template c2bklB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:prolyl endopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl2 endopeptidases: role of inter-domain dynamics in3 catalysis and specificity Resolution 1.5 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.			.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																																																									.	.
Query SS confidence																																																									.	.
Query Sequence		P	D	D	K	I	Y	G	P	D	P	W	S	A	E	S	V	E	F	T	A	K	D	G	T	R	L	Q	G	W	F	I	P	S	S	T	G	P	A	D	N	A	I	A	T	I	I	H	A	H	G	N	A	G	N	M	.	.	S	A	H	W	P	L	V	S	W	L	P	E	R	N	F	N	V	F	M	F	D	Y	R
Query Conservation																																																									.	.
Alig confidence																																																									.	.
Template Conservation
Template Sequence		K	V	D	V	P	M	N	P	E	Q	Y	Q	V	E	Q	V	F	Y	A	S	K	D	G	T	K	V	P	M	F	V	V	H	R	K	D	L	K	R	D	G	N	A	P	T	L	L	Y	G	Y	G	G	F	N	V	N	M	E	A	N	F	R	S	S	I	L	P	W	L	D	A	G	G	V	Y	A	V	A	N	L	R
Template Known Secondary structure						S			G	G	G											T	T	S											T	T				S	S												T	T									G	G	G						T	T									T
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
		115	.	.	.	.	120	.	.	.								.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.
Query Sequence		G	F	G	K	S	K	G	T	P	.	.	.	.	.	.	.	S	Q	A	G	L	L	D	D	T	Q	S	A	I	N	V	V	R	H	R	S	D	V	N	P	Q	R	L	V	L	F	G	Q	S	I	G	G	A	N	I	L	D	V	I	G	R	G	D	R	E	G	I	R	A	V	I	L	D	S	T	F	A	S	Y	A
Query Conservation											.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.																																															.
Template Conservation																																																																.
Template Sequence		G	G	G	E	Y	G	K	A	W	H	D	A	G	R	L	D	K	K	Q	N	V	F	D	D	F	H	A	A	A	E	Y	L	V	Q	Q	K	Y	T	Q	P	K	R	L	A	I	Y	G	G	S	N	G	G	L	L	V	G	A	A	M	T	Q	R	.	P	E	L	Y	G	A	V	V	C	A	V	P	L	L	D	M	V
Template Known Secondary structure		T	S	S	T	T							T	T	S	G	G	G	T																	T	T	S			G	G	G							T														.	G	G	G		S						S					T	T
Template Predicted Secondary structure																																																																.
Template SS confidence
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.		.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.												.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.							.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.												.	.																										.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.												.	.																										.	.	.	.	.	.
Query Sequence		T	I	A	N	Q	M	I	P	G	S	G	Y	L	L	D	E	S	Y	S	.	.	.	.	.	.	.	.	.	.	.	G	E	N	Y	I	A	S	V	S	P	I	.	.	P	L	L	L	I	H	G	K	A	D	H	V	I	P	W	Q	H	S	E	K	L	Y	S	L	A	.	.	.	.	.	.	K	E	P	K	R	L
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.												.	.																										.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.												.	.																										.	.	.	.	.	.
Template Conservation
Template Sequence		R	Y	H	L	F	G	S	G	R	T	W	I	P	E	Y	G	T	A	E	K	P	E	D	F	K	T	L	H	A	Y	S	P	Y	H	H	V	R	P	D	V	R	Y	P	A	L	L	M	M	A	A	D	H	D	D	R	V	D	P	M	H	A	R	K	F	V	A	A	V	Q	N	S	P	G	N	P	A	T	A	L	L
Template Known Secondary structure		T	G	G	G	S	T	T	G	G	G	G							T	T	S												G	G	G				S	S												T	T		S	S	S		T												T	S	T	T			S
Template Predicted Secondary structure
Template SS confidence
		564	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	I	P	D	G	E	H	I	D	A	F	S	D	R	H	G	D	V	Y	R	E	Q	M	V	D	F	I	L	S	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	E	A	N	A	G	H	G	G	A	D	Q	V	A	K	A	I	E	S	S	V	D	L	Y	S	F	L	F	Q	V	L
Template Known Secondary structure					T	T		B	T	T	B		S																				T
Template Predicted Secondary structure
Template SS confidence
		644	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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