Job Description P77538 Confidence 99.96% Date Thu Jan 5 12:30:21 GMT 2012 Rank 18 Aligned Residues 235 % Identity 16% Template c1xfdD_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:dipeptidyl aminopeptidase-like protein 6; PDBTitle: structure of a human a-type potassium channel accelerating factor2 dppx, a member of the dipeptidyl aminopeptidase family Resolution 3.00 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.						.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.																																.
Query SS confidence																																													.	.	.	.	.																																.
Query Sequence		P	W	S	A	E	S	V	E	F	T	A	K	D	G	T	R	L	Q	G	W	F	I	P	S	S	T	G	P	A	D	N	A	I	A	T	I	I	H	A	H	G	N	A	.	.	.	.	.	G	N	M	S	A	H	W	P	L	V	S	W	L	P	E	R	N	F	N	V	F	M	F	D	Y	R	G	F	G	K	S	.
Query Conservation																																													.	.	.	.	.																																.
Alig confidence																																													.	.	.	.	.																																.
Template Conservation
Template Sequence		Q	M	P	K	V	E	Y	R	D	I	E	I	D	D	Y	N	L	P	M	Q	I	L	K	P	A	T	F	T	D	T	T	H	Y	P	L	L	L	V	V	D	G	T	P	G	S	Q	S	V	A	E	K	F	E	V	S	W	E	T	V	M	V	S	S	H	G	A	V	V	V	K	C	D	G	R	G	S	G	F	Q	G
Template Known Secondary structure					B			B						T	T						B			B		S	S			S	S	S												T	T											S								T	T										T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.
								120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.				170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure		.	.	.	.	.	.																																																			.	.	.
Query SS confidence		.	.	.	.	.	.																																																			.	.	.
Query Sequence		.	.	.	.	.	.	K	G	T	P	S	Q	A	G	L	L	D	D	T	Q	S	A	I	N	V	V	R	H	R	S	D	V	N	P	Q	R	L	V	L	F	G	Q	S	I	G	G	A	N	I	L	D	V	I	G	R	G	.	.	.	D	R	E	G	I	R	A	V	I	L	D	S	T	F	A	S	Y	A	T	I	A
Query Conservation		.	.	.	.	.	.																																																			.	.	.
Alig confidence		.	.	.	.	.	.																																																			.	.	.
Template Conservation
Template Sequence		T	K	L	L	H	E	V	R	R	R	L	G	L	L	E	E	K	D	Q	M	E	A	V	R	T	M	L	K	E	Q	Y	I	D	R	T	R	V	A	V	F	G	K	D	Y	G	G	Y	L	S	T	Y	I	L	P	A	K	G	E	N	Q	G	Q	T	F	T	C	G	S	A	L	S	P	I	T	D	F	K	L	Y	A
Template Known Secondary structure							T	T	T	T		T	T	T															S	S	S	S												T													S	S	S	T	T					S						S					T	T	S	S	B
Template Predicted Secondary structure
Template SS confidence
		670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.
		191	.	.							.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.				.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure					.	.	.	.	.	.																																																		.	.	.
Query SS confidence					.	.	.	.	.	.																																																		.	.	.
Query Sequence		N	Q	M	.	.	.	.	.	.	I	P	G	S	G	Y	L	L	D	E	S	Y	S	G	E	N	Y	I	A	S	V	S	P	I	P	L	L	L	I	H	G	K	A	D	H	V	I	P	W	Q	H	S	E	K	L	Y	S	L	A	.	.	.	K	E	P	K	R	L	I	L	I	P	D	G	E	H	I	D	A	F	S
Query Conservation					.	.	.	.	.	.																																																		.	.	.
Alig confidence					.	.	.	.	.	.																																																		.	.	.																.
Template Conservation																																																																														.
Template Sequence		S	A	F	S	E	R	Y	L	G	L	H	G	L	D	N	R	A	Y	E	M	T	K	V	A	H	R	V	S	A	L	E	E	Q	Q	F	L	I	I	H	P	T	A	D	E	K	I	H	F	Q	H	T	A	E	L	I	T	Q	L	I	R	G	K	A	N	Y	S	L	Q	I	Y	P	D	E	S	H	Y	.	F	T	S
Template Known Secondary structure													S	S			S	S	T	T	T	S		T					T	S			S									T	T		S	S	S															T	T									T	T			S	S	.
Template Predicted Secondary structure																																																																														.
Template SS confidence
		750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.		.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	H	G	D	V	Y	R	E	Q	M	V	D	F	I	L	S	A	L	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	S	L	K	Q	H	L	Y	R	S	I	I	N	F	F	V	E	C	F	R
Template Known Secondary structure																	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		829	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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