Job Description P75843 Confidence 66.33% Date Thu Jan 5 12:14:56 GMT 2012 Rank 13 Aligned Residues 126 % Identity 14% Template c2qufB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcription factor pf0095; PDBTitle: crystal structure of transcription factor axxa-pf0095 from pyrococcus2 furiosus Resolution 2.80 Å

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		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Q	L	I	Q	H	I	H	D	K	G	P	V	R	S	A	D	F	E	H	P	R	K	G	A	S	G	W	W	E	W	K	P	H	K	R	H	L	E	G	L	F	T	A	G	K	V	M	V	I	E	R	R	N	F	Q	R	V	Y	D	L	T	H	R	V	M	P	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.															.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.															.	.	.	.	.
Template Sequence		R	D	L	L	S	H	L	T	A	.	M	E	A	Y	F	S	L	L	S	S	K	V	S	V	.	.	.	.	.	S	S	T	A	V	A	K	H	L	K	I	M	E	R	E	G	V	L	Q	S	Y	Y	K	I	S	I	A	K	S	Y	V	F	T	L	T	P	E	M	F	W	Y	K	G	L	D	L	G	D	A	E	L
Template Known Secondary structure									T		.	T	T	T		S	S	S	S		S	S	S			.	.	.	.	.														T	T	T	S																			T	T										S
Template Predicted Secondary structure											.															.	.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.						.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
								194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.																																												210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	D	W	D	D	E	R	D	L	V	S	Q	T	E	A	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	M	L	D	N	S	A	R	S	L	G	I	F	R	E
Query Conservation		.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	D	F	E	I	S	L	S	G	L	D	T	E	P	S	T	L	K	E	M	I	T	D	F	I	K	A	N	K	E	L	E	K	V	L	E	A	F	K	T	I	E	S	Y	R	S	S	L	M	R	K	I	K	E	A	Y	L	K	E	I	G	D	M	T	Q	L	A	I	L	H	Y	L	L	L	N	G	R	A	T	V
Template Known Secondary structure									T	T	S		S				S																																										T	T	T			T	T												S
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	W	L	A	D	Y	Y	R	L	K	R	P	A	L	A	A	W	R	E	A	R	A	E	Q	Q	Q	I	I	A	V	H	V	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	L	S	D	R	L	N	L	K	E	R	E	V	R	E	K	I	S	E	M	A	R	F	V	P	V	K	I	I	N	D	N	T
Template Known Secondary structure									T															T	T	S						T	T	T
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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