Job Description P75843 Confidence 41.40% Date Thu Jan 5 12:14:56 GMT 2012 Rank 39 Aligned Residues 117 % Identity 9% Template c2plyB_ PDB info PDB header:translation/rna Chain: B: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna. Resolution 2.60 Å

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		123	.	.	.	.	.	.	130	.	.	.	.	.								.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.
Query Sequence		E	A	E	I	A	Q	L	I	Q	H	I	H	D	.	.	.	.	.	.	.	K	G	P	V	R	S	A	D	F	E	H	P	R	K	G	A	S	G	W	W	E	W	K	P	H	K	R	H	L	E	G	L	F	T	A	G	K	V	M	V	I	E	R	R	N	F	Q	R	V	Y	D	L	T	H	R	V	M	P	D	W
Query Conservation															.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.																		.	.	.																					.	.	.	.	.													.	.	.
Template Conservation																																							.	.	.																					.	.	.	.	.													.	.	.
Template Sequence		Q	A	W	W	Q	A	V	T	R	A	L	E	E	F	H	S	R	Y	P	L	R	P	G	L	A	R	E	E	L	R	S	R	Y	F	S	R	L	.	.	.	P	A	R	V	Y	Q	A	L	L	E	E	W	S	R	E	G	R	L	Q	L	.	.	.	.	.	A	A	N	T	V	A	L	A	G	F	T	P	.	.	.
Template Known Secondary structure																				T	T	S														T	T	S	.	.	.															T	T					.	.	.	.	.		S	S					T	T				.	.	.
Template Predicted Secondary structure																																							.	.	.																					.	.	.	.	.													.	.	.
Template SS confidence
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.				.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.						.	.	500	.	.	.	.	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence		D	D	E	R	D	L	V	S	Q	T	E	A	E	I	I	M	L	D	N	S	A	R	S	L	G	.	.	I	F	R	E	Q	W	L	A	D	Y	Y	R	L	K	R	P	A	L	A	A	W	R	E	A	R	A	E	Q	Q	Q	I	I	A	V
Query Conservation																											.	.
Alig confidence		.	.	.	.																						.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	S	F	S	E	T	Q	K	K	L	L	K	D	L	E	D	K	Y	R	V	S	R	W	Q	P	P	W	V	K	E	V	A	G	S	F	N	L	D	P	S	E	L	E	E	L	L	H	Y	L	V	R	E	G	V	L	V	K	I
Template Known Secondary structure		.	.	.	.																					T	T	S											T	T																	T	S				S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions