Return to main results Retrieve Phyre Job Id

Job DescriptionP0A972
Confidence99.72%DateThu Jan 5 11:09:31 GMT 2012
Rank14Aligned Residues65
% Identity32%Templatec2ytxA_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:cold shock domain-containing protein e1; PDBTitle: solution structure of the second cold-shock domain of the human2 kiaa0885 protein (unr protein)
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........
Predicted Secondary structure 




























Query SS confidence 



































































Query Sequence  SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVIAL
Query Conservation      
 

     





  
    


 
 
 
       
  
  
 
       
  
  
  
Alig confidence 









..
























.





























Template Conservation   
  
 
   ..
 




        



 
 
  .    
  

 
 
 
     
  
  
  
Template Sequence  ARCQGVVCAM. . KEAFGFIERGDVVKEIFFHYSEFKG. DLETLQPGDDVEFTIKDRNGKEVATDVRLL
Template Known Secondary structure 




..
SS
SSS


TTT

S.
TTS

S




SSS
B
Template Predicted Secondary structure 
..











.













Template SS confidence 



































































   17..20...... ...30.........40.........50. ........60.........70.........80.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions