Return to main results Retrieve Phyre Job Id

Job DescriptionP0A972
Confidence87.71%DateThu Jan 5 11:09:31 GMT 2012
Rank30Aligned Residues53
% Identity26%Templatec1xpuB_
PDB info PDB header:transcription/rnaChain: B: PDB Molecule:rho transcription termination factor; PDBTitle: structural mechanism of inhibition of the rho transcription2 termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-3 dihydrobicyclomycin (fpdb)
Resolution3.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20...... ...30.........40.........50.........60.........
Predicted Secondary structure 







.....


















Query SS confidence 












. . . . .










































Query Sequence  SKGFGFITPEDGS. . . . . KDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVIAL
Query Conservation   





  
   ..... 


 
 
 
       
  
  
 
       
  
  
  
Alig confidence 












.....













...

























Template Conservation   

 



           




   

   ...

 

 
 
 
  
   
    
  
Template Sequence  QDGFGFLRSADSSYLAGPDDIYVSPSQIRRFN. . . LRTGDTISGKIRPPKEGERYFALLKV
Template Known Secondary structure  TTS

GGGTT


TT

T...

TT



SS

S
Template Predicted Secondary structure 




















...














Template SS confidence 




























































   5960.........70.........80.........90 .........100.........110......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions