Return to main results Retrieve Phyre Job Id

Job DescriptionP11447
Confidence100.00%DateThu Jan 5 11:32:38 GMT 2012
Rank17Aligned Residues411
% Identity20%Templated1vdka_
SCOP infoL-aspartase-like L-aspartase-like L-aspartase/fumarase
Resolution1.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10......... 20.........30.........40.........50.........60.........70........
Predicted Secondary structure 










...

















Query SS confidence 

















. . .


























































Query Sequence  ALWGGRFTQAADQRFKQF. . . NDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEALNVLLEDVRARPQQILE
Query Conservation   

 

           
...  
   
  
    
    
    
   


  
 
  
  

  
             
Alig confidence 



....









...


























































Template Conservation    

....  
 

   
 
           
 
   

 
 
 
    


    
 

  
  

        
    
Template Sequence  KYWG. . . . AQTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLELGELPEEIAKAIIQAAEEVVQGKWDDHFPLVV
Template Known Secondary structure 



....

SSTTT
B

TTSS
TTTTGGG


BS
Template Predicted Secondary structure 



....


























Template SS confidence 















































































   1920.. .......30.........40.........50.........60.........70.........80.........90....
 
   79 80.........90.........100. ........110.........120..... ....130.........140..
Predicted Secondary structure 
.......






........



.
Query SS confidence 
. . . . . . .





















. . . . . . . .























.
















Query Sequence  S. . . . . . . DAEDIHSWVEGKLIDKVGQLGK. . . . . . . . KLHTGRSRNDQVATDLKLWCKDTV. SELLTANRQLQSALVET
Query Conservation   .......  


   

  
    
    ........ 

 
 



   

  
  
  
.  
   
  
   
   
Alig confidence 
.......





















........























.
















Template Conservation     
 

    
   

   
   

   
     
   

 
 



   

  
         
   
  
   
   
Template Sequence  FQTGSGTQTNMNVNEVIANRASEILGKPLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAK
Template Known Secondary structure  SS
TT
TT

TTS
SS





TTT

T
Template Predicted Secondary structure 

























Template SS confidence 















































































   95....100.........110.........120.........130.........140.........150.........160.........170....
 
   143......150.........160.........170.........180.........190.........200......... 210.....
Predicted Secondary structure 




























.......
Query SS confidence 


































































. . . . . . .





Query Sequence  AQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYEIDR. . . . . . . EQLAGW
Query Conservation 
     
 
 



 
 
 
 
 
         
 
   

           

 


 

    

.......   
  
Alig confidence 

























































.







.......





Template Conservation 
       
 



 
 
 
 
 
         
 
   

      
    


 

.

               

  
Template Sequence  AQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAV. GTGLNAHPRFGELVAKYLAEE
Template Known Secondary structure  TTT
TTGGGG
TT
TTT.SS
TTS
TT
Template Predicted Secondary structure 















.







Template SS confidence 















































































   175....180.........190.........200.........210.........220.........230.. .......240.........250...
 
   216... 220.........230.........240.........250.........260. ........270.........280.........290.
Predicted Secondary structure 


.










...




















Query SS confidence 



.









































. . .





























Query Sequence  LGFA. SATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNT. . . GEAGFVELSDRVTSGSSLMPQKKNPDALEL
Query Conservation 


 .    

      

   
    

  
  
 


 

   

... 
 
 
 
      


 

 



   
 
Alig confidence 



.









































...








.



















Template Conservation 


              

   
    
   
  
 


 

  
 
    
  

  
.    


 

 




  
 
Template Sequence  TGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEITIP. ANEPGSSIMPGKVNPTQVEA
Template Known Secondary structure  SS


S
TT

T

SSSS

S

.

S

SS

TT



Template Predicted Secondary structure 


















.













Template SS confidence 















































































   254.....260.........270.........280.........290.........300.........310.. .......320.........330..
 
   292.......300.........310.........320.........330.........340.... .....350.........360.........370
Predicted Secondary structure 




.






Query SS confidence 




















































.

























Query Sequence  IRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAAL. VLDGIQVKRPRCQEAAQQGYANATEL
Query Conservation 
   
    
                  
       
          
     .

  
 

 


   
      

 
Alig confidence 




















































.

























Template Conservation 
   
  
 
              
 
          
     
           
 

 

 


   
  
  
 
 
Template Sequence  LTMVVVRVYGNDHTVAFAGSQGNFQLNVYKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATAL
Template Known Secondary structure  TT
BTTB
S
TGGG

TT
GGGG
Template Predicted Secondary structure 


















Template SS confidence 















































































   333......340.........350.........360.........370.........380.........390.........400.........410..
 
   371........380.........390.........400.........410.........420.........430.........440
Predicted Secondary structure 






















Query SS confidence 





































































Query Sequence  ADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPILSLQSCLDKRAAKGGV
Query Conservation 
  

  
   
 

  
  
   
   
  
  
              

   


   
  
   

 
Alig confidence 



.....













......









....

















.......

Template Conservation 
  
.....
   
  

  
  ......  
 
     ....  
   

  



    .......

Template Sequence  NKAI. . . . . GYDKAAEIVKKALK. . . . . . KTLKQAALEL. . . . GYLTEEEFDRIVVPMRLA. . . . . . . KP
Template Known Secondary structure  .....
STTTTTS

......

T....SSS


.......

Template Predicted Secondary structure 
.....
......
....






.......

Template SS confidence 





































































   413... ...420.........430 .........440 .........450........ .460
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions