Job Description P11447 Confidence 100.00% Date Thu Jan 5 11:32:38 GMT 2012 Rank 27 Aligned Residues 362 % Identity 19% Template c3e04C_ PDB info PDB header:lyase Chain: C: PDB Molecule:fumarate hydratase; PDBTitle: crystal structure of human fumarate hydratase Resolution 1.95 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.				.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.																																																								.
Query SS confidence																							.	.	.																																																								.
Query Sequence		A	L	W	G	G	R	F	T	Q	A	A	D	Q	R	F	K	Q	F	N	D	S	.	.	.	L	R	F	D	Y	R	L	A	E	Q	D	I	V	G	S	V	A	W	S	K	A	L	V	T	V	G	V	L	T	A	E	E	Q	A	Q	L	E	E	A	L	N	V	L	L	E	D	V	R	A	R	P	Q	Q	I	L	.
Query Conservation																							.	.	.																																																								.
Alig confidence						.	.	.	.														.	.	.																															.																									.
Template Conservation						.	.	.	.																																															.
Template Sequence		K	Y	Y	G	.	.	.	.	A	Q	T	V	R	S	T	M	N	F	K	I	G	G	V	T	E	R	M	P	T	P	V	I	K	A	F	G	I	L	K	R	A	A	A	E	V	N	Q	D	Y	G	L	D	P	K	.	I	A	N	A	I	M	K	A	A	D	E	V	A	E	G	K	L	N	D	H	F	P	L	V	V
Template Known Secondary structure			S			.	.	.	.										T			S		G	G	G	B																					G	G	G	T					.														T	T	S		G	G	G				B	S
Template Predicted Secondary structure						.	.	.	.																																															.
Template SS confidence
		66	.	.	.					70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
								78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.										.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure		.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.																				.
Query SS confidence		.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.																				.
Query Sequence		.	.	.	.	.	.	E	S	D	A	E	D	I	H	S	W	V	E	G	K	L	I	D	K	V	G	Q	L	G	K	.	.	.	.	.	.	.	.	.	K	L	H	T	G	R	S	R	N	D	Q	V	A	T	D	L	K	L	W	.	C	K	D	T	V	S	E	L	L	T	A	N	R	Q	L	Q	S	A	L	V	E
Query Conservation		.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.																				.
Alig confidence		.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.																				.
Template Conservation
Template Sequence		W	Q	T	G	S	G	T	Q	T	N	M	N	V	N	E	V	I	S	N	R	A	I	E	M	L	G	G	E	L	G	S	K	I	P	V	H	P	N	D	H	V	N	K	S	Q	S	S	N	D	T	F	P	T	A	M	H	I	A	A	A	I	E	V	H	E	V	L	L	P	G	L	Q	K	L	H	D	A	L	D	A
Template Known Secondary structure		S	S		T	T																					T			T	T	S			S	S							T	T	T																						T
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.								210	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.
Query Sequence		T	A	Q	N	N	Q	D	A	V	M	P	G	Y	T	H	L	Q	R	A	Q	P	V	T	F	A	H	W	C	L	A	Y	V	E	M	L	A	R	D	E	S	R	L	Q	D	A	L	K	R	L	D	V	S	P	L	G	C	G	A	L	A	G	T	A	Y	E	I	D	R	.	.	.	.	.	.	.	E	Q	L	A	G
Query Conservation																																																																						.	.	.	.	.	.	.
Alig confidence																																																													.									.	.	.	.	.	.	.
Template Conservation																																																													.
Template Sequence		K	S	K	E	F	A	Q	I	I	K	I	G	R	T	H	T	Q	D	A	V	P	L	T	L	G	Q	E	F	S	G	Y	V	Q	Q	V	K	Y	A	M	T	R	I	K	A	A	M	P	R	I	Y	E	L	A	A	G	G	T	A	V	.	G	T	G	L	N	T	R	I	G	F	A	E	K	V	A	A	K	V	A	A
Template Known Secondary structure						T	T	T								T	T																													T		T	T	T	T				T	T		T	T	T	.	S	S		T	T	S		T	T
Template Predicted Secondary structure																																																													.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		215	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.				.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure							.																																												.	.	.
Query SS confidence							.																																												.	.	.
Query Sequence		W	L	G	F	A	.	S	A	T	R	N	S	L	D	S	V	S	D	R	D	H	V	L	E	L	L	S	A	A	A	I	G	M	V	H	L	S	R	F	A	E	D	L	I	F	F	N	T	G	.	.	.	E	A	G	F	V	E	L	S	D	R	V	T	S	G	S	S	L	M	P	Q	K	K	N	P	D	A	L	E
Query Conservation							.																																												.	.	.
Alig confidence							.																																												.	.	.									.
Template Conservation																																																														.
Template Sequence		L	T	G	L	P	F	V	T	A	P	N	K	F	E	A	L	A	A	H	D	A	L	V	E	L	S	G	A	M	N	T	T	A	C	S	L	M	K	I	A	N	D	I	R	F	L	G	S	G	P	R	S	G	L	G	E	L	I	L	P	.	E	N	E	P	G	S	S	I	M	P	G	K	V	N	P	T	Q	C	E
Template Known Secondary structure				S	S						S																																					T			S	S	S	S								.			S				S	S	S	T	T
Template Predicted Secondary structure																																																														.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.		.	.	.
Predicted Secondary structure																																																								.																						.
Query SS confidence																																																								.																						.
Query Sequence		L	I	R	G	K	C	G	R	V	Q	G	A	L	T	G	M	M	M	T	L	K	G	L	P	L	A	Y	N	K	D	M	Q	E	D	K	E	G	L	F	D	A	L	D	T	W	L	D	C	L	H	M	A	A	L	.	V	L	D	G	I	Q	V	K	R	P	R	C	Q	E	A	A	Q	Q	G	Y	A	.	N	A	T
Query Conservation																																																								.																						.
Alig confidence																																																								.																						.
Template Conservation
Template Sequence		A	M	T	M	V	A	A	Q	V	M	G	N	H	V	A	V	T	V	G	G	S	N	G	H	F	E	L	N	V	F	K	P	M	M	I	K	N	V	L	H	S	A	R	L	L	G	D	A	S	V	S	F	T	E	N	C	V	V	G	I	Q	A	N	T	E	R	I	N	K	L	M	N	E	S	L	M	K	P	K	D
Template Known Secondary structure																							T		B	T	T	B																													T	G	G	G											T	T	T	T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
		369	370
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	L
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		506	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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