Job Description P11447 Confidence 27.83% Date Thu Jan 5 11:32:38 GMT 2012 Rank 38 Aligned Residues 54 % Identity 28% Template c2xgvA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:psiv capsid n-terminal domain; PDBTitle: structure of the n-terminal domain of capsid protein from2 rabbit endogenous lentivirus (relik) Resolution 2.00 Å

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		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	L	H	T	G	R	S	R	N	D	Q	V	A	T	D	L	K	L	W	C	K	D	T	V	S	E	L	L	T	A	N	R	Q	L	Q	S	A	L	V	E	T	A	Q	N	N	Q	D	A	V	M	P	G	Y	T	H	L	Q	R	A	Q	P	V	T	F	A	H
Query Conservation
Alig confidence															.	.	.	.	.	.																													.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.																													.	.	.	.	.	.	.
Template Sequence		G	L	I	S	Q	D	L	S	S	R	E	Q	V	.	.	.	.	.	.	Q	L	L	E	V	V	P	G	L	Q	A	D	K	D	M	L	G	A	Y	L	E	E	R	A	R	E	W	D	.	.	.	.	.	.	.	A	Q	P	Q	Q	P	L	P	Y	T	S	A	H
Template Known Secondary structure					T	T	T								.	.	.	.	.	.								S																					.	.	.	.	.	.	.	T	S	S		S	S		S	S
Template Predicted Secondary structure															.	.	.	.	.	.																													.	.	.	.	.	.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.							.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.								.	.	.	.	.	.	.	.	90	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions