Job Description P11447 Confidence 100.00% Date Thu Jan 5 11:32:38 GMT 2012 Rank 25 Aligned Residues 415 % Identity 18% Template c2ptsA_ PDB info PDB header:lyase Chain: A: PDB Molecule:adenylosuccinate lyase; PDBTitle: crystal structure of wild type escherichia coli adenylosuccinate lyase Resolution 2.00 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.							.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.
Query Sequence		W	G	G	R	F	T	Q	A	A	D	Q	R	F	K	Q	F	N	D	S	L	R	F	D	Y	R	L	A	E	Q	D	I	V	G	S	V	A	W	S	K	A	L	V	T	V	G	V	L	T	A	.	.	.	.	.	.	E	E	Q	A	Q	L	E	E	A	L	N	V	L	L	E	D	V	R	A	R	P	Q	Q	I	L
Query Conservation																																																			.	.	.	.	.	.
Alig confidence																				.	.	.	.	.																											.	.	.	.	.	.
Template Conservation																				.	.	.	.	.
Template Sequence		V	D	G	R	Y	G	D	K	V	S	A	L	R	G	I	F	S	E	.	.	.	.	.	Y	G	L	L	K	F	R	V	Q	V	E	V	R	W	L	Q	K	L	A	A	H	A	A	I	K	E	V	P	A	F	A	A	D	A	I	G	Y	L	D	A	I	V	A	S	F	S	E	E	D	A	A	R	I	K	T	I	E
Template Known Secondary structure		T	T	T	T	T	G	G	G	G					T	T	T	S		.	.	.	.	.																						T	T		T	T	S																	T
Template Predicted Secondary structure																				.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.						30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.							.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																						.	.	.	.	.	.																															.
Query SS confidence																						.	.	.	.	.	.																															.
Query Sequence		E	S	D	A	E	D	I	H	S	W	V	E	G	K	L	I	D	K	V	G	.	.	.	.	.	.	Q	L	G	K	K	L	H	T	G	R	S	R	N	D	Q	V	A	T	D	L	K	L	W	C	K	D	T	V	S	E	.	L	L	T	A	N	R	Q	L	Q	S	A	L	V	E	T	A	Q	N	N	Q	D	A	V
Query Conservation																						.	.	.	.	.	.																															.
Alig confidence									.													.	.	.	.	.	.																															.
Template Conservation									.
Template Sequence		R	T	T	N	H	D	V	.	K	A	V	E	Y	F	L	K	E	K	V	A	E	I	P	E	L	H	A	V	S	E	F	I	H	F	A	C	T	S	E	D	I	N	N	L	S	H	A	L	X	L	K	T	A	R	D	E	V	I	L	P	Y	W	R	Q	L	I	D	G	L	K	D	L	A	V	Q	Y	R	D	I	P
Template Known Secondary structure					S				.												T	T						T	T	G	G	G	T	T	T	T																						T																			T	T	T
Template Predicted Secondary structure									.
Template SS confidence
		87	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.					.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																																													.														.									.	.	.	.
Query SS confidence																																													.														.									.	.	.	.
Query Sequence		M	P	G	Y	T	H	L	Q	R	A	Q	P	V	T	F	A	H	W	C	L	A	Y	V	E	M	L	A	R	D	E	S	R	L	Q	D	A	L	K	R	L	D	V	S	.	P	L	G	C	G	A	L	A	G	T	A	Y	E	.	I	D	R	E	Q	L	A	G	.	.	.	.	W	L	G	F	A	S	A	T	R	N
Query Conservation																																													.														.									.	.	.	.
Alig confidence																																													.														.									.	.	.	.
Template Conservation
Template Sequence		L	L	S	R	T	H	G	Q	P	A	T	P	S	T	I	G	K	E	X	A	N	V	A	Y	R	X	E	R	Q	Y	R	Q	L	N	Q	V	E	I	L	G	K	I	N	G	A	V	G	N	Y	N	A	H	I	A	A	Y	P	E	V	D	W	H	Q	F	S	E	E	F	V	T	S	L	G	I	Q	W	N	P	Y	T
Template Known Secondary structure							T	T																																						T	T	S	S									T	T	S													T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	D	S	V	S	D	R	D	H	V	L	E	L	L	S	A	A	A	I	G	M	V	H	L	S	R	F	A	E	D	L	I	F	F	N	T	G	E	A	G	F	V	E	L	S	D	R	V	T	S	G	S	S	L	M	P	Q	K	K	N	P	D	A	L	E	L	I	R	G	K	C	G	R	V	Q	G	A	L	T
Query Conservation
Alig confidence			.	.																																								.	.	.	.	.	.	.	.	.
Template Conservation			.	.																																								.	.	.	.	.	.	.	.	.
Template Sequence		T	.	.	Q	I	E	P	H	D	Y	I	A	E	L	F	D	C	V	A	R	F	N	T	I	L	I	D	F	D	R	D	V	W	G	Y	I	A	L	N	H	F	K	.	.	.	.	.	.	.	.	.	Q	K	T	I	X	P	H	K	V	N	P	I	D	F	E	N	S	E	G	N	L	G	L	S	N	A	V	L	Q
Template Known Secondary structure		S	.	.	S	S																																	T	T				.	.	.	.	.	.	.	.	.											T
Template Predicted Secondary structure			.	.																																								.	.	.	.	.	.	.	.	.
Template SS confidence
		246			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.										.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	M	M	T	L	K	G	L	P	L	A	Y	N	K	D	M	Q	E	D	K	E	G	L	F	D	A	L	D	T	W	L	D	C	L	H	M	A	A	L	V	L	D	G	I	Q	V	K	R	P	R	C	Q	E	A	A	Q	Q	G	Y	A	N	A	T	E	L	A	D	Y	L	V	A	K	G	V	P	F	R	E	A
Query Conservation
Alig confidence																																																																											.
Template Conservation																																																																											.
Template Sequence		H	L	A	S	K	L	P	V	S	R	W	Q	R	D	L	T	D	S	T	V	L	R	N	L	G	V	G	I	G	Y	A	L	I	A	Y	Q	S	T	L	K	G	V	S	K	L	E	V	N	R	D	H	L	L	D	E	L	D	H	N	W	E	V	L	A	E	P	I	Q	T	V	X	R	R	.	Y	G	I	E	K	P
Template Known Secondary structure							T	T			S	T	T			T						G	G	G																				T	T													T	T		G	G	G	G											.	T	T		S	S
Template Predicted Secondary structure																																																																											.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.		.	.	.	.	400	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	H	I	V	G	E	A	V	V	E	A	I	R	Q	G	K	P	L	E	D	L	P	L	S	E	L	Q	K	F	S	Q	V	I	D	E	D	V	Y	P	I	L	S	L	Q	S	C	L	D	K	R	A	A	K	G	G	V	S	P	Q	Q	V	A	Q	A	I
Query Conservation
Alig confidence																													.	.	.	.	.	.															.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.															.	.	.	.	.	.	.
Template Sequence		Y	E	K	L	K	E	L	T	R	V	D	A	E	G	X	K	Q	F	I	D	G	L	A	L	P	E	E	.	.	.	.	.	.	E	K	A	R	L	K	A	X	T	P	A	N	Y	I	.	.	.	.	.	.	.	G	R	A	I	T	X	V	D	E	L	K
Template Known Secondary structure																						T	S	S					.	.	.	.	.	.							T			T	T	T			.	.	.	.	.	.	.	T	T								G	G
Template Predicted Secondary structure																													.	.	.	.	.	.															.	.	.	.	.	.	.
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.							.	430	.	.	.	.	.	.	.	.	.	440	.	.								.	.	.	.	.	.	.	450	.	.	.