Job Description P11447 Confidence 100.00% Date Thu Jan 5 11:32:38 GMT 2012 Rank 26 Aligned Residues 384 % Identity 15% Template c1yisA_ PDB info PDB header:lyase Chain: A: PDB Molecule:adenylosuccinate lyase; PDBTitle: structural genomics of caenorhabditis elegans: adenylosuccinate lyase Resolution 2.40 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	F	T	Q	A	A	D	Q	R	F	K	Q	F	N	D	S	L	R	F	D	Y	R	L	A	E	Q	D	I	V	G	S	V	A	W	S	K	A	L	V	T	V	G	V	L	T	A	E	E	Q	A	Q	L	E	E	A	L	N	V	L	L	E	D	V	R	A	R	P	Q	Q	I	L	E	S	D	A	E	D	I	H
Query Conservation
Alig confidence								.										.	.	.	.	.																																																		.									.
Template Conservation								.										.	.	.	.	.																																																		.									.
Template Sequence		T	R	Y	C	K	N	.	S	P	L	V	S	I	L	S	E	.	.	.	.	.	T	N	K	A	T	L	W	R	Q	L	W	I	W	L	A	E	A	E	K	E	L	G	L	K	Q	V	T	Q	D	A	I	D	E	X	K	S	N	R	D	V	F	D	W	P	F	I	R	S	E	.	E	R	K	L	K	H	D	V	.
Template Known Secondary structure			T	T	T	T	T	.		T					T	S		.	.	.	.	.																					T	T		T	T	S											T	T	T											.				S	S				.
Template Predicted Secondary structure								.										.	.	.	.	.																																																		.									.
Template SS confidence
		13	.	.	.	.	.		.	20	.	.	.	.	.	.	.						.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	W	V	E	G	K	L	I	D	K	V	G	Q	L	G	K	K	L	H	T	G	R	S	R	N	D	Q	V	A	T	D	L	K	L	W	C	K	D	T	V	S	E	L	L	T	A	N	R	Q	L	Q	S	A	L	V	E	T	A	Q	N	N	Q	D	A	V	M	P	G	Y	T	H	L	Q	R	A	Q	P	V	T	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	A	H	N	H	A	F	G	K	L	C	P	T	A	A	G	I	I	H	L	G	A	T	S	C	F	V	Q	D	N	A	D	L	I	A	Y	R	D	S	I	D	H	I	L	K	R	F	A	T	V	I	D	R	L	A	A	F	S	L	K	N	K	E	V	V	T	V	G	R	T	H	Y	Q	T	A	S	L	V	T	V
Template Known Secondary structure													T	T	T	G	G	G	T	T	T	T																																								T	T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.					.	.	.	.	.								210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																									.	.	.	.						.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.						.	.	.	.	.	.	.
Query Sequence		A	H	W	C	L	A	Y	V	E	M	L	A	R	D	E	S	R	L	Q	D	A	L	K	R	L	D	V	S	P	L	G	C	G	A	L	A	G	T	A	.	.	.	.	Y	E	I	D	R	.	.	.	.	.	.	.	E	Q	L	A	G	W	L	G	F	A	S	A	T	R	N	S	L	D	S	V	S	D	R	D	H
Query Conservation																																									.	.	.	.						.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.						.	.	.	.	.	.	.																	.
Template Conservation																																																																									.
Template Sequence		G	K	R	G	V	L	W	A	Q	E	L	L	X	A	F	Q	S	L	S	E	F	R	D	K	X	R	F	R	G	I	K	G	A	T	G	T	Q	D	S	F	L	T	L	F	A	G	D	E	S	K	V	E	A	L	D	E	L	V	T	K	K	A	N	F	S	N	R	F	L	I	T	.	G	Q	T	Y	S	R	Q	Q
Template Known Secondary structure																												B			S		T	T	T	S	S								T	T	T																T	T		S		B		S	S		.	S	S	S			T
Template Predicted Secondary structure																																																																									.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	E	L	L	S	A	A	A	I	G	M	V	H	L	S	R	F	A	E	D	L	I	F	F	N	T	G	E	A	G	F	V	E	L	S	D	R	V	T	S	G	S	S	L	M	P	Q	K	K	N	P	D	A	L	E	L	I	R	G	K	C	G	R	V	Q	G	A	L	T	G	M	M	M	T	L	K	G	L	P
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	S	Q	L	V	F	S	L	S	L	L	G	A	A	A	K	K	V	C	T	D	I	R	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	F	G	E	L	L	E	P	K	K	N	P	X	K	S	E	R	C	C	A	L	S	R	K	L	I	N	A	P	Q	E	A	L	T	I	L	A	D	Q	G
Template Known Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	S																							T	S										T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.															.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
			315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.			.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390
Predicted Secondary structure		.																																																.	.																							.
Query SS confidence		.																																																.	.																							.
Query Sequence		.	L	A	Y	N	K	D	M	Q	E	D	K	E	G	L	F	D	A	L	D	T	W	L	D	C	L	H	M	A	A	L	V	L	D	G	I	Q	V	K	R	P	R	C	Q	E	A	A	Q	.	.	Q	G	Y	A	N	A	T	E	L	A	D	Y	L	V	A	K	G	V	P	F	R	E	.	A	H	H	I	V	G	E
Query Conservation		.																																																.	.																							.
Alig confidence		.																																																.	.																							.
Template Conservation
Template Sequence		L	E	R	T	L	D	D	S	A	G	R	R	X	L	I	P	D	V	L	L	T	A	E	A	L	L	T	T	L	Q	N	I	F	E	G	L	S	V	Q	T	D	N	V	K	K	I	V	E	D	E	I	A	F	L	G	L	E	K	A	X	X	X	L	Q	T	X	A	D	P	F	F	D	S	V	R	D	R	V	V	G
Template Known Secondary structure		T	T			G	G	G																																																												T	T	T	T	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	V	E	A	I	R	Q	G	K	P	L	E	D	L	P	L	S	E	L	Q	K	F	S	Q	V	I	D	E	D	V	Y	P	I	L	S	L	Q	S	C	L	D	K	R	A	A	K	G	G	V	S	P	Q	Q	V	A	Q	A	I	A	F
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.
Template Sequence		L	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	P	I	N	F	T	.	.	.	.	.	.	.	G	R	C	V	S	Q	T	E	S	F	I	A	K
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	G	S	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.
Template SS confidence
		436	.	.																																	.	440	.	.	.	.								.	.	.	.	.	450	.	.	.	.	.	.	.