Job Description P23930 Confidence 100.00% Date Thu Jan 5 11:40:39 GMT 2012 Rank 12 Aligned Residues 233 % Identity 20% Template c3n05B_ PDB info PDB header:ligase Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: crystal structure of nh3-dependent nad+ synthetase from streptomyces2 avermitilis Resolution 2.35 Å

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		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.															.	280	.	.	.
Predicted Secondary structure																																											.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	K	T	I	Q	V	S	M	V	Q	G	D	I	P	Q	S	L	K	W	D	E	G	Q	L	L	N	T	L	K	I	Y	Y	N	A	T	A	P	L	M	G	K	.	S	S	L	I	I	W	P	E	S	A	I	T	D	L	E	I	N	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	F	L	K	A
Query Conservation																																											.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.																		.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.
Template Sequence		S	L	Q	L	R	L	A	L	N	Q	I	D	S	T	V	G	D	I	.	.	.	.	.	.	A	G	N	A	E	A	I	L	R	W	T	R	H	S	A	E	Q	G	A	H	L	V	A	F	P	E	M	A	L	T	G	Y	P	V	E	D	L	A	L	R	S	S	F	V	E	A	S	R	T	A	L	R	E	L	A	A
Template Known Secondary structure			B													T	T			.	.	.	.	.	.																T	T	T		S						T	T	T	T	T		S			G	G	G	G	G
Template Predicted Secondary structure																				.	.	.	.	.	.
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.							.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.						.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.
Query SS confidence																								.	.	.	.	.
Query Sequence		L	D	G	E	L	R	D	K	G	S	S	L	V	T	G	I	V	D	A	R	L	N	.	.	.	.	.	K	Q	N	R	Y	D	T	Y	N	T	I	I	T	L	G	K	G	A	P	Y	S	Y	E	S	A	D	R	Y	N	K	N	H	L	V	P	F	G	E	F	V	P	L	E	S	I	L	R	P	L	A	P	F	F
Query Conservation																								.	.	.	.	.
Alig confidence																								.	.	.	.	.																		.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	A	E	E	G	F	G	E	L	P	V	L	V	G	Y	L	D	R	S	E	S	A	Q	P	K	Y	G	Q	P	A	G	A	P	R	N	A	A	A	V	L	H	R	G	.	.	.	.	.	R	V	A	L	T	F	A	K	H	H	L	P	N	Y	G	V	F	D	E	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T		T	T	S											S	S		B	T	T	T	T	B		T	T											T	T	.	.	.	.	.													S	S	S	S				.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.						.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.		.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		D	L	P	M	S	S	F	S	R	G	P	Y	I	Q	P	P	L	S	A	N	G	I	E	L	T	A	A	I	C	Y	E	I	I	L	G	.	E	Q	V	R	D	N	F	R	P	D	T	D	Y	L	L	T	I	S	N	D	A	W	F	G	K	S	I	G	P	W	Q	H	F	Q	M	A	R	M	R	A	L	E	L	A
Query Conservation																																					.
Alig confidence		.	.	.											.																						.																																.	.
Template Conservation		.	.	.											.																																																						.	.
Template Sequence		.	.	.	F	R	Y	F	V	P	G	D	T	M	.	P	I	V	R	L	H	G	V	D	I	A	L	A	I	C	E	D	L	W	Q	D	G	G	R	V	P	A	A	R	S	A	G	A	G	L	L	L	S	V	N	A	S	P	Y	E	R	D	K	D	D	T	R	L	.	.	E	L	V	R	K	R	A	Q	E	A	G
Template Known Secondary structure		.	.	.											.						T	T								G	G	G	G	G	S	T	T	S							T	T	T		S									B					S	S					.	.											T
Template Predicted Secondary structure		.	.	.											.																																																						.	.
Template SS confidence
					137	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.			200	.	.	.	.	.	.	.	.	.	210
		438	.	440	.	.	.	.	.	.										.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure											.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.
Query Sequence		R	P	L	L	R	S	T	N	N	.	.	.	.	.	.	.	.	.	G	I	T	A	V	I	G	P	Q	G	E	I	Q	A	M	I	P	Q	F	T	R	E	V	L	T	T	N	V	T	P	T	T	G	L
Query Conservation											.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	T	T	A	Y	L	A	M	I	G	G	Q	D	E	L	V	F	D	G	D	S	I	V	V	D	R	D	G	E	V	V	A	R	A	P	Q	F	S	E	G	C	V	V	L	D	L	D	L	P	A	A	E
Template Known Secondary structure		S												T	T					B							S	S	S								B	S	S										B		B
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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