Job Description P23930 Confidence 99.97% Date Thu Jan 5 11:40:39 GMT 2012 Rank 14 Aligned Residues 217 % Identity 14% Template c3ilvA_ PDB info PDB header:ligase Chain: A: PDB Molecule:glutamine-dependent nad(+) synthetase; PDBTitle: crystal structure of a glutamine-dependent nad(+) synthetase2 from cytophaga hutchinsonii Resolution 1.79 Å

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		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.									.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																																					.																								.	.	.	.	.	.	.	.
Query SS confidence																																					.																								.	.	.	.	.	.	.	.
Query Sequence		K	T	I	Q	V	S	M	V	Q	G	D	I	P	Q	S	L	K	W	D	E	G	Q	L	L	N	T	L	K	I	Y	Y	N	A	T	A	.	P	L	M	G	K	S	S	L	I	I	W	P	E	S	A	I	T	D	L	E	I	N	Q	.	.	.	.	.	.	.	.	Q	P	F	L	K	A	L	D	G	E	L	R	D
Query Conservation																																					.																								.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.													.																								.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.
Template Sequence		S	T	I	R	I	G	G	A	A	V	N	Q	T	P	I	D	W	.	.	.	.	.	.	E	N	N	V	K	N	I	L	D	A	I	E	E	A	K	N	A	N	V	E	I	L	C	L	P	E	L	C	I	T	G	Y	G	C	E	D	L	F	L	T	D	W	V	A	E	T	A	I	E	Y	C	F	E	I	A	A	S
Template Known Secondary structure															T	T			.	.	.	.	.	.																	T	T		S						T	T	T	T	T		S			G	G	G	G	G	S																T	T
Template Predicted Secondary structure																			.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.							.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
			291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	K	G	S	S	L	V	T	G	I	V	D	A	R	L	N	K	Q	N	R	Y	D	T	Y	N	T	I	I	T	L	G	K	G	A	P	Y	S	Y	E	S	A	D	R	Y	N	K	N	H	L	V	P	F	G	E	F	V	P	L	E	S	I	L	R	P	L	A	P	F	F	D	L	P	M	S	S	F	S	R	G	P
Query Conservation		.
Alig confidence		.															.	.	.	.	.														.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.														.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	T	D	I	T	V	S	L	G	L	P	X	R	I	A	.	.	.	.	.	G	I	T	Y	N	C	V	C	L	V	E	N	G	.	.	.	.	.	I	V	K	G	F	S	A	K	Q	F	L	A	N	E	G	V	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	E	T	R	W	F	T	A	W	P
Template Known Secondary structure			T	T	S											T	.	.	.	.	.	T											T	T	.	.	.	.	.									S	S				S	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	T
Template Predicted Secondary structure																	.	.	.	.	.														.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90						.	.	.	.	.	.	.	.	.	100	.	.	.						.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120																.	.	.	.	.	.	.	.	.	130
		370	.	.	.																.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	I	Q	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	S	A	N	G	I	E	L	T	A	A	I	C	Y	E	I	I	L	G	E	Q	V	R	D	N	F	R	P	D	T	D	Y	L	L	T	I	S	N	D	A	W	F	G	K	S	I	G	P	W	Q	H	F	Q	M	A	R	M	R	A	L
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.										.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.										.	.
Template Sequence		R	N	H	T	T	T	F	L	Y	N	D	V	K	Y	P	F	G	D	V	L	Y	N	V	K	D	A	R	I	G	F	E	I	C	E	D	H	Y	E	K	.	.	.	.	.	.	.	.	.	G	A	T	L	V	L	N	P	S	.	.	A	S	H	F	A	F	G	K	S	A	I	R	Y	D	L	V	I	G	G	S	E
Template Known Secondary structure		T	T								T	T							S						T	T								T	T			G	G	G	.	.	.	.	.	.	.	.	.	T		S							.	.			B			T	T
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.										.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.										170	.	.	.	.	.	.	.	.			.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		435	.	.	.	.	440	.	.	.	.	.	.	.	.										.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.				.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.																					.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.																					.	.	.
Query Sequence		E	L	A	R	P	L	L	R	S	T	N	N	G	I	.	.	.	.	.	.	.	.	.	T	A	V	I	G	P	Q	G	E	I	Q	A	M	I	P	Q	F	T	R	E	.	.	.	V	L	T	T	N	V	T	P	T	T
Query Conservation																.	.	.	.	.	.	.	.	.																					.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation
Template Sequence		R	F	D	C	T	Y	V	Y	A	N	L	L	G	N	E	A	G	R	X	I	Y	D	G	E	V	L	I	A	H	K	G	K	L	I	Q	R	N	D	R	L	S	F	K	N	V	N	L	I	Y	A	D	I	A	T	L	E
Template Known Secondary structure			T	T	S											S	S	S	S												T	T								S	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions