Job Description P23930 Confidence 100.00% Date Thu Jan 5 11:40:39 GMT 2012 Rank 13 Aligned Residues 233 % Identity 17% Template c3dlaD_ PDB info PDB header:ligase Chain: D: PDB Molecule:glutamine-dependent nad(+) synthetase; PDBTitle: x-ray crystal structure of glutamine-dependent nad+ synthetase from2 mycobacterium tuberculosis bound to naad+ and don Resolution 2.35 Å

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		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	Q	W	F	T	P	Q	P	E	K	T	I	Q	V	S	M	V	Q	G	D	I	P	Q	S	L	K	W	D	E	G	Q	L	L	N	T	L	K	I	Y	Y	N	A	T	A	.	P	L	M	G	K	S	S	L	I	I	W	P	E	S	A	I	T	D	L	E	I	N	Q	Q	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																														.																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.													.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.
Template Sequence		M	N	F	Y	S	A	Y	Q	H	G	F	V	R	V	A	A	C	T	H	H	T	T	I	G	D	P	.	.	.	.	.	.	A	A	N	A	A	S	V	L	D	M	A	R	A	C	H	D	D	G	A	A	L	A	V	F	P	E	L	T	L	S	G	Y	S	I	E	D	V	L	L	Q	D	S	L	L	D	A	V	E
Template Known Secondary structure				T	T		T	T	T	T	T													T	T			.	.	.	.	.	.																	T	T		S						T	T	T	T	T		T	T		G	G	G	G	G
Template Predicted Secondary structure																												.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.							.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	F	L	K	A	L	D	G	E	L	R	D	K	G	S	S	L	V	T	G	I	V	D	A	R	L	N	K	Q	N	R	Y	D	T	Y	N	T	I	I	T	L	G	K	G	A	P	Y	S	Y	E	S	A	D	R	Y	N	K	N	H	L	V	P	F	G	E	F	V	P	L	E	S	I	L	R	P	L	A	P	F	F
Query Conservation
Alig confidence																												.	.	.	.	.														.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.														.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	A	L	L	D	L	V	T	E	S	A	D	L	L	P	V	L	V	V	G	A	P	L	R	H	R	.	.	.	.	.	H	R	I	Y	N	T	A	V	V	I	H	R	G	.	.	.	.	.	A	V	L	G	V	V	P	K	S	Y	L	P	T	Y	R	E	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											G	G	G			S											T	.	.	.	.	.	T											T	T	.	.	.	.	.									S						T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																												.	.	.	.	.														.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100						.	.	.	.	.	.	.	.	.	110	.	.	.						.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		359	360	.	.	.	.	.	.	.	.	.	370	.	.																			.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.		.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Query Sequence		D	L	P	M	S	S	F	S	R	G	P	Y	I	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	P	L	S	A	N	G	I	E	L	T	A	A	I	C	Y	E	I	I	L	G	E	.	Q	V	R	D	N	F	R	P	D	T	D	Y	L	L	T	I	S	N	D	A	W	F	G	K	S
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Alig confidence		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.																		.	.
Template Conservation		.																																																																								.	.
Template Sequence		.	Y	E	R	R	Q	M	A	P	G	D	G	E	R	G	T	I	R	I	G	G	A	D	V	A	F	G	T	D	L	L	F	A	A	S	D	L	P	G	F	V	L	H	V	E	I	C	E	D	M	F	V	P	M	P	P	S	A	E	A	A	L	A	G	A	T	V	L	A	N	L	S	.	.	G	S	P	I	T	I
Template Known Secondary structure		.							B			T	T			S					T	T						S	S	S						T	T		T	T								G	G	G	G	S	S	S	S										T									.	.				B		T
Template Predicted Secondary structure		.																																																																								.	.
Template SS confidence
			131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.											.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.			.	470	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.																						.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.																						.	.
Query Sequence		I	G	P	W	Q	H	F	Q	M	A	R	M	R	A	L	E	L	A	R	P	L	L	R	S	T	N	N	G	.	.	.	.	.	.	.	.	.	.	I	T	A	V	I	G	P	Q	G	E	I	Q	A	M	I	P	Q	F	T	R	E	.	.	V	L	T	T	N	V	T	P
Query Conservation																														.	.	.	.	.	.	.	.	.	.																						.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation
Template Sequence		G	R	A	E	D	R	R	L	L	A	R	S	A	S	A	R	C	L	A	A	Y	V	Y	A	A	A	G	E	G	E	S	T	T	D	L	A	W	D	G	Q	T	M	I	W	E	N	G	A	L	L	A	E	S	E	R	F	P	K	G	V	R	R	S	V	A	D	V	D	T
Template Known Secondary structure		T																T	T	S									T	T	S			S	S		B										T	T								S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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