Job Description P23930 Confidence 100.00% Date Thu Jan 5 11:40:39 GMT 2012 Rank 2 Aligned Residues 234 % Identity 15% Template c2plqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:aliphatic amidase; PDBTitle: crystal structure of the amidase from geobacillus pallidus rapc8 Resolution 1.90 Å

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		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.												.	.	.	280	.	.
Predicted Secondary structure																					.																																												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.																																												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	P	Q	P	E	K	T	I	Q	V	S	M	V	Q	G	D	I	P	Q	.	S	L	K	W	D	E	G	Q	L	L	N	T	L	K	I	Y	Y	N	A	T	A	P	L	M	G	K	S	S	L	I	I	W	P	E	S	A	I	T	D	L	E	I	N	.	.	.	.	.	.	.	.	.	.	.	Q	Q	P	F	L	K
Query Conservation																					.																																												.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.																																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	S	S	S	H	D	T	V	G	I	A	V	V	N	Y	K	M	P	R	L	H	T	K	A	E	V	I	E	N	A	K	K	I	A	D	M	V	V	G	M	K	Q	G	L	P	G	M	D	L	V	V	F	P	E	Y	S	T	M	G	I	M	Y	D	Q	D	E	M	F	A	T	A	A	S	I	P	G	E	E	T	A
Template Known Secondary structure		S				T	T										B						S																							T	T								T	T	T	T	T					S									B		S	S	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	D	G	E	L	R	D	K	G	S	S	L	V	T	G	I	V	D	A	R	L	N	K	Q	N	R	Y	D	T	Y	N	T	I	I	T	L	G	K	G	A	P	Y	S	Y	E	S	A	D	R	Y	N	K	N	H	L	V	P	F	G	E	F	V	P	L	E	S	I	L	R	P	L	A	P	F	F	D	L	P	M
Query Conservation
Alig confidence																																											.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	F	A	E	A	C	K	K	A	D	T	W	G	V	F	S	L	T	G	E	K	H	E	D	H	P	N	K	A	P	Y	N	T	L	V	L	I	N	N	K	G	.	.	.	.	E	I	V	Q	K	Y	R	K	I	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	C	P	I
Template Known Secondary structure											T													T	T	T	T	S	S											T	T	S	.	.	.	.									S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T
Template Predicted Secondary structure																																											.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.					.	.	.	130	.	.	.	.	.	.	.																					.	.	140	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	F	S	R	G	P	Y	I	Q	P	P	L	S	A	N	G	I	E	L	T	A	A	I	C	Y	E	I	I	L	G	E	Q	V	R	D	N	F	R	P	D	T	D	Y	L	L	T	I	S	N	D	A	W	F	G	K	S	I	G	P	W	Q	H	F	Q	M	A	R	M	R	A	L	E	L	A	R	P	L	L	R
Query Conservation
Alig confidence																																																			.	.												.	.
Template Conservation																																																			.	.												.	.
Template Sequence		E	G	W	Y	P	G	D	T	T	Y	V	T	E	G	P	K	G	L	K	I	S	L	I	V	C	D	D	G	N	Y	P	E	I	W	R	D	C	A	M	K	G	A	E	L	I	V	R	C	Q	.	.	G	Y	M	Y	P	A	K	E	Q	Q	I	.	.	M	M	A	K	A	M	A	W	A	N	N	T	Y	V	A	V
Template Known Secondary structure					B											G	G	G								G	G	G	G	G	S										T	T		S							.	.			B	T	T							.	.										T	T
Template Predicted Secondary structure																																																			.	.												.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		443	.	.	.	.	.										.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.
Query Sequence		S	T	N	N	G	I	.	.	.	.	.	.	.	.	.	T	A	V	I	G	P	Q	G	E	I	Q	A	M	I	P	Q	F	T	R	E	V	L	T	T	N	V	T	P
Query Conservation								.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	N	A	T	G	F	D	G	V	Y	S	Y	F	G	H	S	A	I	I	G	F	D	G	R	T	L	G	E	C	G	T	E	E	N	G	I	Q	Y	A	E	V	S	I
Template Known Secondary structure									S	S												T	T	S								S		T	T
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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