Job Description P23930 Confidence 100.00% Date Thu Jan 5 11:40:39 GMT 2012 Rank 5 Aligned Residues 227 % Identity 18% Template c2e2kC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:formamidase; PDBTitle: helicobacter pylori formamidase amif contains a fine-tuned cysteine-2 glutamate-lysine catalytic triad Resolution 2.50 Å

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		221	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.												.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure															.																																												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.																																												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	I	Q	V	S	M	V	Q	G	D	I	P	Q	.	S	L	K	W	D	E	G	Q	L	L	N	T	L	K	I	Y	Y	N	A	T	A	P	L	M	G	K	S	S	L	I	I	W	P	E	S	A	I	T	D	L	E	I	N	.	.	.	.	.	.	.	.	.	.	.	Q	Q	P	F	L	K	A	L	D	G	E	L
Query Conservation															.																																												.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.																																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	F	L	V	A	A	I	Q	F	P	V	P	I	V	N	S	R	K	D	I	D	H	N	I	E	S	I	I	R	T	L	H	A	T	K	A	G	Y	P	G	V	E	L	I	I	F	P	E	Y	S	T	Q	G	L	N	T	A	K	W	L	S	E	E	F	L	L	D	V	P	G	K	E	T	E	L	Y	A	K	A	C
Template Known Secondary structure																	S																							T	T								T	T	T	T	T				T	T	T	T	T	S	G	G	G		B		S	S	S
Template Predicted Secondary structure
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	K	G	S	S	L	V	T	G	I	V	D	A	R	L	N	K	Q	N	R	Y	D	T	Y	N	T	I	I	T	L	G	K	G	A	P	Y	S	Y	E	S	A	D	R	Y	N	K	N	H	L	V	P	F	G	E	F	V	P	L	E	S	I	L	R	P	L	A	P	F	F	D	L	P	M	S	S	F	S	R	G
Query Conservation
Alig confidence																					.	.															.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.															.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	E	A	K	V	Y	G	V	F	S	I	M	E	R	N	P	D	S	N	.	.	K	N	P	Y	N	T	A	I	I	I	D	P	Q	G	.	.	.	.	E	I	I	L	K	Y	R	K	L	F	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	N	P	I	E	P	W	Y	P	G	D
Template Known Secondary structure					T												S	S	T	T	.	.	S											T	T	S	.	.	.	.									S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T				B			S
Template Predicted Secondary structure																					.	.															.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.					.	.	.	.	130	.	.	.	.	.	.																				.	.	.	140	.	.	.	.	.	.	.
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Y	I	Q	P	P	L	S	A	N	G	I	E	L	T	A	A	I	C	Y	E	I	I	L	G	E	Q	V	R	D	N	F	R	P	D	T	D	Y	L	L	T	I	S	N	D	A	W	F	G	K	S	I	G	P	W	Q	H	F	Q	M	A	R	M	R	A	L	E	L	A	R	P	L	L	R	S	T	N	N	G	I
Query Conservation
Alig confidence																																													.	.												.	.
Template Conservation																																													.	.												.	.
Template Sequence		L	G	M	P	V	C	E	G	P	G	G	S	K	L	A	V	C	I	S	H	D	G	M	I	P	E	L	A	R	E	A	A	Y	K	G	C	N	V	Y	I	R	I	S	.	.	G	Y	S	T	Q	V	N	D	Q	W	I	.	.	L	T	N	R	S	N	A	W	H	N	L	M	Y	T	V	S	V	N	L	A	G	Y
Template Known Secondary structure		S								G	G	G								G	G	G	G	G											T	T		S							.	.				S	S	S						.	.									T	T	T									S		S
Template Predicted Secondary structure																																													.	.												.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
										449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	T	A	V	I	G	P	Q	G	E	I	Q	A	M	I	P	Q	F	T	R	E	V	L	T	T	N	V	T	P
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	N	F	Y	Y	F	G	E	G	Q	I	C	N	F	D	G	T	T	L	V	Q	G	H	R	N	P	W	E	I	V	T	G	E	I	Y	P
Template Known Secondary structure															T	T	S								S		T	T
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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