Job Description P00954 Confidence 98.72% Date Thu Jan 5 10:57:18 GMT 2012 Rank 39 Aligned Residues 307 % Identity 13% Template c3tqoA_ PDB info PDB header:ligase Chain: A: PDB Molecule:cysteinyl-trna synthetase; PDBTitle: structure of the cysteinyl-trna synthetase (cyss) from coxiella2 burnetii. Resolution 2.30 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.					.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.								.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																									.	.	.	.																	.				.	.	.	.	.	.	.											.
Query SS confidence																									.	.	.	.																	.				.	.	.	.	.	.	.											.
Query Sequence		P	I	V	F	S	G	A	Q	P	S	G	E	L	T	I	G	N	Y	M	G	A	L	R	.	.	.	.	Q	W	V	N	M	Q	D	D	Y	H	C	I	Y	C	I	V	.	D	Q	H	.	.	.	.	.	.	.	A	I	T	V	R	Q	D	A	Q	K	.	L	R	K	A	T	L	D	T	L	A	L	Y	L	A	C
Query Conservation																									.	.	.	.																	.				.	.	.	.	.	.	.											.
Alig confidence																									.	.	.	.																	.				.	.	.	.	.	.	.											.
Template Conservation
Template Sequence		K	L	Y	V	C	G	X	T	V	Y	D	Y	X	H	I	G	H	G	R	S	W	I	I	F	D	X	V	V	R	Y	L	R	X	R	G	Y	E	V	T	F	V	R	N	I	T	D	I	D	D	K	I	I	K	R	A	G	E	N	K	E	S	P	A	A	L	A	E	R	F	I	Q	I	L	H	E	D	E	K	A	L
Template Known Secondary structure									B	T	T	S			B																				T	T									B	B													T	T	S
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.													.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	I	D	P	E	K	S	T	I	F	V	Q	S	H	V	P	E	H	A	Q	L	G	W	A	L	N	C	Y	.	.	.	.	.	.	.	.	.	.	.	.	T	Y	F	G	E	L	S	R	M	T	Q	F	K	D	K	S	A	R	Y	A	E	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	V	L	S	P	D	Q	E	P	R	A	T	Q	Y	V	P	E	I	I	K	L	I	Q	K	L	L	D	N	Q	Y	A	Y	T	G	Q	N	G	D	V	F	F	D	V	R	R	F	K	D	Y	G	K	L	S	H	R	H	L	D	S	K	R	D	P	L	D	F	V	L	W	K	K	A	K	P	G	E	P	K	W	D
Template Known Secondary structure		T					S	B			B	G	G	G																T	S					T	T	S						T	T	T		T	T	T	T	T	T	T	T		S					S	S	T	T										T	T	S			B
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
					122	.	.	.	.	.	.	.	130	.	.	.	.				.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure		.	.	.														.	.	.																	.
Query SS confidence		.	.	.														.	.	.																	.
Query Sequence		.	.	.	N	A	G	L	F	D	Y	P	V	L	M	A	A	.	.	.	D	I	L	L	Y	Q	T	N	L	V	P	V	G	E	D	Q	.	K	Q	H	L	E	L	S	R	D	I	A	Q	R	F	N	A	L	Y	G	E	I	F	K	V	P	E	P	F	I	P	K	S	G	A	R	V	M	S	L	L	E	P	T	K
Query Conservation		.	.	.														.	.	.																	.
Alig confidence		.	.	.														.	.	.																	.																																	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.
Template Sequence		S	P	W	G	E	G	R	P	G	W	H	I	E	C	S	A	X	S	S	S	I	L	G	Q	P	F	D	I	H	G	G	G	L	D	L	K	F	P	H	H	E	N	E	I	A	Q	S	E	A	G	E	E	K	P	F	V	K	L	W	X	H	A	G	L	L	E	I	N	.	.	.	.	.	.	.	.	.	.	K	E
Template Known Secondary structure			T	T		S																			S	S								G	G	G	T	T	T														S	S															T	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.											.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	M	S	K	S	D	D	N	R	N	N	V	I	G	L	L	E	D	P	K	S	V	V	K	K	I	K	R	A	V	T	D	S	D	E	P	P	V	V	R	Y	D	V	Q	N	K	A	G	V	S	N	L	L	D	I	L	S	A	V	T	G	Q	S	I	P	E	L	E	K	Q	F	E	G	K	M	Y	G	H	L	K
Query Conservation
Alig confidence							.	.	.																							.	.	.	.	.																							.	.	.	.	.
Template Conservation							.	.	.																							.	.	.	.	.																							.	.	.	.	.
Template Sequence		K	X	S	K	S	.	.	.	L	G	N	I	I	S	I	R	E	A	L	K	E	S	D	V	E	V	L	R	Y	F	.	.	.	.	.	L	L	S	G	H	Y	R	N	P	L	S	Y	S	K	E	N	L	E	N	G	R	L	.	.	.	.	.	A	L	E	R	F	Y	L	A	L	R	G	L	P	V	S	S	Y	T
Template Known Secondary structure					T	T	.	.	.	T	T				B								S									.	.	.	.	.				S		T	T	S															.	.	.	.	.										T	T
Template Predicted Secondary structure							.	.	.																							.	.	.	.	.																							.	.	.	.	.
Template SS confidence
		267	.	.	270	.				.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.						.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.						.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	V	A	D	A	V	S	G	M	L	T	E	L	Q	E	R	Y	H	R	F	R	N	D	E	A	F	L	Q	Q	V	M	K	D	G	A	E	K	A	S	A	H	A	S	R	T	L	K	A	V	Y	E	A	I	G	F	V	A	K	P
Query Conservation
Alig confidence															.
Template Conservation															.
Template Sequence		D	R	F	Y	E	A	X	D	D	D	F	N	T	.	P	I	A	F	A	L	L	F	E	X	V	R	E	I	N	R	F	R	D	N	N	Q	I	E	K	A	A	V	L	A	A	E	L	K	C	L	G	N	I	F	G	L	L	Q	Y	S
Template Known Secondary structure									T	B	T				.																				T	T																	G	G	G	T		S		S
Template Predicted Secondary structure															.
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.		.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions