Job Description P00954 Confidence 100.00% Date Thu Jan 5 10:57:18 GMT 2012 Rank 2 Aligned Residues 334 % Identity 68% Template c3sz3A_ PDB info PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from vibrio cholerae2 with an endogenous tryptophan Resolution 1.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	K	P	I	V	F	S	G	A	Q	P	S	G	E	L	T	I	G	N	Y	M	G	A	L	R	Q	W	V	N	M	Q	D	D	Y	H	C	I	Y	C	I	V	D	Q	H	A	I	T	V	R	Q	D	A	Q	K	L	R	K	A	T	L	D	T	L	A	L	Y	L	A	C	G	I	D	P	E	K	S	T	I	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	S	K	P	I	V	L	S	G	V	Q	P	S	G	E	L	S	I	G	N	Y	L	G	A	L	R	Q	W	Q	Q	M	Q	D	D	Y	D	C	Q	Y	C	V	V	D	L	H	A	I	T	V	R	Q	D	P	Q	A	L	H	E	A	T	L	D	A	L	A	I	C	L	A	V	G	V	D	P	K	K	S	T	L	F
Template Known Secondary structure		G	G	S									S	S	S			B							T	G	G	G								S												T	T	S																					T	T			T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	S	H	V	P	E	H	A	Q	L	G	W	A	L	N	C	Y	T	Y	F	G	E	L	S	R	M	T	Q	F	K	D	K	S	A	R	Y	A	E	N	I	N	A	G	L	F	D	Y	P	V	L	M	A	A	D	I	L	L	Y	Q	T	N	L	V	P	V	G	E	D	Q	K	Q	H	L	E	L	S	R	D	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Q	S	H	V	P	E	H	A	Q	L	G	W	V	L	N	C	Y	T	Q	M	G	E	L	S	R	M	T	Q	F	K	D	K	S	A	R	Y	A	N	D	V	N	A	G	L	F	G	Y	P	V	L	M	A	A	D	I	L	L	Y	G	A	H	Q	V	P	V	G	S	D	Q	K	Q	H	L	E	L	A	R	D	I
Template Known Secondary structure			G	G	G		T											T	T	S							T												G	G	G																		T	T	T		S						G	G	G
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		161	.	.	.	.	.	.	.	.				170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		A	Q	R	F	N	A	L	Y	G	.	.	.	E	I	F	K	V	P	E	P	F	I	P	K	S	G	A	R	V	M	S	L	L	E	P	T	K	K	M	S	K	S	D	D	N	R	N	N	V	I	G	L	L	E	D	P	K	S	V	V	K	K	I	K	R	A	V	T	D	S	D	E	P	P	V	V	R	Y	D	V
Query Conservation											.	.	.
Alig confidence											.	.	.
Template Conservation
Template Sequence		A	T	R	F	N	N	I	Y	S	P	E	Q	P	I	F	T	I	P	E	P	Y	I	P	T	V	N	A	R	V	M	S	L	Q	D	A	T	K	K	M	S	K	S	D	D	N	R	K	N	V	I	T	L	L	E	D	P	K	S	I	I	K	K	I	N	K	A	Q	T	D	A	E	T	P	P	R	I	A	Y	D	V
Template Known Secondary structure											S	S	S		S	S									S								T	T								T	T		S		G	G	G			B	T	T												T							S	S							T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		Q	N	K	A	G	V	S	N	L	L	D	I	L	S	A	V	T	G	Q	S	I	P	E	L	E	K	Q	F	E	G	K	M	Y	.	G	H	L	K	G	E	V	A	D	A	V	S	G	M	L	T	E	L	Q	E	R	Y	H	R	F	R	N	D	E	A	F	L	Q	Q	V	M	K	D	G	A	E	K	A	S	A	H
Query Conservation																																			.
Alig confidence																																			.
Template Conservation
Template Sequence		E	N	K	A	G	I	A	N	L	M	G	L	Y	S	A	A	T	G	K	T	F	A	E	I	E	A	Q	Y	A	G	V	E	M	Y	G	P	F	K	K	D	V	G	E	A	V	V	A	M	L	E	P	V	Q	A	E	Y	Q	R	I	R	N	D	R	E	Y	L	N	S	V	M	R	D	G	A	E	K	A	S	A	K
Template Known Secondary structure		T	T																										T	T	T				S																											T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	R	T	L	K	A	V	Y	E	A	I	G	F	V	A	K	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	Q	T	L	K	K	V	Y	A	A	V	G	F	V	A	R	P
Template Known Secondary structure														T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions