Job Description P00954 Confidence 97.87% Date Thu Jan 5 10:57:18 GMT 2012 Rank 59 Aligned Residues 199 % Identity 14% Template c3sp1B_ PDB info PDB header:ligase Chain: B: PDB Molecule:cysteinyl-trna synthetase; PDBTitle: crystal structure of cysteinyl-trna synthetase (cyss) from borrelia2 burgdorferi Resolution 2.55 Å

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		2	.	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.				.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.					.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure									.																			.	.	.								.																				.	.	.	.
Query SS confidence									.																			.	.	.								.																				.	.	.	.
Query Sequence		T	K	P	I	V	F	S	.	G	A	Q	P	S	G	E	L	T	I	G	N	Y	M	G	A	L	R	.	.	.	Q	W	V	N	M	Q	D	.	D	Y	H	C	I	Y	C	I	V	D	Q	H	A	I	T	V	R	Q	D	.	.	.	.	A	Q	K	L	R	K	A	T	L	D	T	L	A	L	Y	L	A	C	G	I
Query Conservation									.																			.	.	.								.																				.	.	.	.
Alig confidence									.																			.	.	.								.										.	.	.	.							.	.	.	.
Template Conservation																																																.	.	.	.
Template Sequence		E	N	V	K	V	Y	A	C	G	P	T	V	Y	N	Y	A	H	I	G	N	F	R	T	Y	I	F	G	D	L	L	I	K	T	L	R	F	L	G	Y	K	V	N	Y	A	M	N	.	.	.	.	I	T	D	I	G	H	G	L	T	V	Y	E	I	S	E	F	F	T	E	A	F	F	N	D	C	R	K	L	N	I
Template Known Secondary structure		S										B	S	S	S																							T	T									.	.	.	.		B		S																								T	T
Template Predicted Secondary structure																																																.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.					.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.									.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	P	E	K	S	T	I	F	V	Q	S	H	V	P	E	H	A	Q	L	G	W	A	L	N	C	Y	T	Y	F	G	E	.	.	.	.	.	.	.	.	L	S	R	M	T	Q	F	K	D	K	S	A	R	Y	A	E	N	I	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	Y	P	D	K	V	L	V	A	S	K	H	I	P	I	M	I	E	V	V	K	I	L	E	E	K	K	I	T	Y	F	S	N	G	N	V	Y	F	D	T	S	C	F	K	S	Y	G	E	M	A	G	I	K	F	K	R	N	K	T	D	F	V	L	W	F	T	N	S	K	F	K	D	Q	E	M	K	W	D	S	P
Template Known Secondary structure					S					G	G	G															T	T						T	T						G	G	G		T	T	T	T	G	G	G					S	S	S	T	T									S				T	T				B			T
Template Predicted Secondary structure
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
								124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																												.
Query SS confidence		.	.	.	.	.	.																												.
Query Sequence		.	.	.	.	.	.	G	L	F	D	Y	P	V	L	M	A	A	D	I	L	L	Y	Q	T	N	L	V	P	V	G	E	D	Q	.	K	Q	H	L	E	L	S	R	D	I	A	Q	R	F	N	A	L	Y	G	E	I	F	K	V	P	E	P	F	I	P	K	S	G	A	R	V	M	S	L	L	E	P	T	K	K	M
Query Conservation		.	.	.	.	.	.																												.
Alig confidence		.	.	.	.	.	.																												.																																	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		W	G	F	G	Y	P	S	W	H	L	E	C	A	A	M	N	L	E	Y	F	K	D	A	L	D	I	H	L	G	G	V	D	H	I	G	V	H	H	I	N	E	I	A	I	A	E	C	F	L	N	K	K	W	C	D	V	F	V	H	G	E	F	L	I	M	D	.	.	.	.	.	.	.	.	.	.	Y	N	K	M
Template Known Secondary structure		T		S																		T	T									G	G	G	T	T	T														T	S				S										S	S	.	.	.	.	.	.	.	.	.	.	S	S	B
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.											.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		S	K	S	D	D	N	R	N	N	V	I	G	L	L	E	.	D	P	K	S	V	V
Query Conservation																	.
Alig confidence					.	.	.										.
Template Conservation					.	.	.
Template Sequence		S	F	I	.	.	.	T	V	K	D	L	E	D	Q	N	F	S	P	L	D	F	R
Template Known Secondary structure					.	.	.								T	T
Template Predicted Secondary structure					.	.	.
Template SS confidence
		280	.	.				.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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