Job Description P00954 Confidence 100.00% Date Thu Jan 5 10:57:18 GMT 2012 Rank 14 Aligned Residues 286 % Identity 20% Template c3jxeB_ PDB info PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of pyrococcus horikoshii tryptophanyl-trna2 synthetase in complex with trpamp Resolution 3.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.																			.	.
Query SS confidence																																		.																			.	.
Query Sequence		T	K	P	I	V	F	S	G	A	Q	P	S	G	E	L	T	I	G	N	Y	M	G	A	L	R	Q	W	V	N	M	Q	D	.	D	Y	H	C	I	Y	C	I	V	D	Q	H	A	I	T	V	R	Q	.	.	D	A	Q	K	L	R	K	A	T	L	D	T	L	A	L	Y	L	A	C	G	I	D	P	E	K	S	T
Query Conservation																																		.																			.	.
Alig confidence																																		.																			.	.
Template Conservation
Template Sequence		R	G	F	F	L	Y	T	G	R	G	P	S	G	P	M	H	I	G	H	I	I	P	F	F	A	T	K	W	L	Q	E	K	F	G	V	N	L	Y	I	Q	I	T	D	D	E	K	F	L	F	K	E	N	L	T	F	D	D	T	K	R	W	A	Y	D	N	I	L	D	I	I	A	V	G	F	D	P	D	K	T	F
Template Known Secondary structure													S	S			B																																			S	S																			T	T				T	T	S
Template Predicted Secondary structure
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		I	F	V	Q	S	H	V	P	E	H	A	Q	L	G	W	A	L	N	C	Y	T	Y	F	G	E	L	S	R	M	T	Q	F	K	D	K	S	A	R	Y	A	E	N	I	N	A	G	L	F	D	Y	P	V	L	M	A	A	D	I	L	L	Y	Q	T	N	.	L	V	P	V	G	E	D	Q	K	Q	H	L	E	L	S
Query Conservation																																																																		.
Alig confidence																															.	.	.	.	.	.	.																													.
Template Conservation																															.	.	.	.	.	.	.
Template Sequence		I	F	Q	N	S	E	F	T	K	I	Y	E	M	A	I	P	I	A	K	K	I	N	F	S	M	A	K	A	V	.	.	.	.	.	.	.	F	G	F	T	E	Q	S	K	I	G	M	I	F	F	P	A	I	Q	I	A	P	T	F	F	E	R	K	R	C	L	I	P	A	A	I	D	Q	D	P	Y	W	R	L	Q
Template Known Secondary structure					T	T	T	S	T													S									.	.	.	.	.	.	.					T	T	S													G	G	G	G	S	S	S	S								G	G	G
Template Predicted Secondary structure																															.	.	.	.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180								.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	I	A	Q	R	F	N	A	L	Y	G	E	I	F	K	V	P	E	P	F	I	P	K	S	G	A	R	V	M	S	L	L	E	P	T	K	K	M	S	K	S	D	D	N	R	N	N	V	I	G	L	L	E	D	P	K	S	V	V	K	K	I	K	R	A	V	T	D	S	D	E	P	P	V	V	R	Y	D	V
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.																						.	.																								.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.																						.	.																								.	.	.	.	.	.	.	.	.	.
Template Sequence		R	D	F	A	E	S	L	G	Y	Y	K	T	A	A	L	.	.	.	.	.	.	.	.	.	H	S	K	F	V	P	S	L	T	S	L	S	G	K	M	S	A	S	K	P	E	.	.	T	A	I	Y	L	T	D	S	P	E	D	V	E	K	K	V	W	K	F	T	L	K	C	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T	T	T	T	S							.	.	.	.	.	.	.	.	.								S	S		S	S	S				T	T	S	G	G	.	.	G			B	T	T												T	S					.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.																						.	.																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.										240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260			.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		Q	N	K	A	G	V	S	N	L	L	D	I	L	S	A	V	T	G	Q	S	I	P	E	L	E	K	Q	F	E	G	K	M	Y	.	.	G	H	L	K	G	E	V	A	D	A	V	S	G	M	L	T	E	L	Q	E	R	Y	H	R	F	R	N	D	E	A	F	L	Q	Q	V	M	K	D	G	A	E	K	A	S	A
Query Conservation																																			.	.
Alig confidence		.	.	.	.																														.	.																										.	.	.												.
Template Conservation		.	.	.	.																																																									.	.	.												.
Template Sequence		.	.	.	.	V	V	F	K	W	L	E	I	F	F	E	E	D	D	K	K	L	K	E	R	Y	Y	A	C	K	N	G	E	L	T	C	G	E	C	K	R	Y	L	I	S	K	I	Q	E	F	L	K	E	H	Q	R	R	R	K	K	A	.	.	.	E	K	L	V	E	K	F	K	Y	T	G	.	K	L	A	Q	E
Template Known Secondary structure		.	.	.	.									T	T																T	T	S	S																												.	.	.									T	T	S	.
Template Predicted Secondary structure		.	.	.	.																																																									.	.	.												.
Template SS confidence
						302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.				.	.	360	.	.	.	.	.	.	.	.		.	370	.	.	.
		316	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	S	R	T	L	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	W	N	E	A	I	P	E
Template Known Secondary structure				T	T	S
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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