Job Description P00954 Confidence 100.00% Date Thu Jan 5 10:57:18 GMT 2012 Rank 17 Aligned Residues 280 % Identity 20% Template c3focB_ PDB info PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase from giardia lamblia Resolution 2.09 Å

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		2	.	.	.	.	.	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure													.																						.																			.	.
Query SS confidence													.																						.																			.	.
Query Sequence		T	K	P	I	V	F	S	G	A	Q	P	.	S	G	E	L	T	I	G	N	Y	M	G	A	L	R	Q	W	V	N	M	Q	D	.	D	Y	H	C	I	Y	C	I	V	D	Q	H	A	I	T	V	R	Q	.	.	D	A	Q	K	L	R	K	A	T	L	D	T	L	A	L	Y	L	A	C	G	I	D	P	E	K	S
Query Conservation													.																						.																			.	.
Alig confidence													.																						.																			.	.
Template Conservation
Template Sequence		H	P	I	Y	I	Y	T	G	R	G	P	S	S	G	A	L	H	L	G	H	L	L	P	F	I	F	T	K	Y	L	Q	D	A	F	K	C	Y	V	V	I	Q	I	T	D	D	E	K	F	L	R	N	R	S	L	S	Y	A	E	V	D	S	Y	T	R	E	N	I	K	D	I	I	A	C	G	F	D	P	D	K	T
Template Known Secondary structure														S	S			B																		T																	T	T																			T	T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	I	F	V	Q	S	H	V	P	E	H	A	Q	L	G	W	A	L	N	C	Y	T	Y	F	G	E	L	S	R	M	T	Q	F	K	D	K	S	A	R	Y	A	E	N	I	N	A	G	L	F	D	Y	P	V	L	M	A	A	D	I	L	L	Y	Q	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.
Template Sequence		F	I	F	I	N	S	Q	Y	L	S	L	K	N	R	Y	R	F	S	C	L	V	D	R	M	L	P	I	S	Q	L	R	A	S	.	.	.	.	F	G	F	S	N	D	A	N	V	G	Y	A	A	F	P	P	K	Q	M	L	P	V	Y	S	T	Y	F	D	G	L	P	F	T	R	V	P	L	P	V	G	A	V	L
Template Known Secondary structure										T	T	S	T	T											T										.	.	.	.					S	S							T							G	G	G	S	G	G	G	G	T	T	S	G	G	G		S	B
Template Predicted Secondary structure																																			.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180					.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
																							143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	P	V	G	E	D	Q	K	Q	H	L	E	L	S	R	D	I	A	Q	R	F	N	A	L	Y	G	E	I	F	K	V	P	E	P	F	I	P	K	S	G	A	R	V	M	S	L	L	E	P	T	K	K	M	S	K	S	D	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.								.	.	.
Template Conservation																																														.	.	.	.	.	.								.	.	.
Template Sequence		S	P	V	H	V	V	E	E	L	F	P	D	S	K	R	Y	Q	K	A	M	C	L	I	A	S	G	I	E	Q	D	P	Y	F	R	L	A	R	D	L	A	P	R	M	G	.	.	.	.	.	.	H	P	K	N	A	Y	L	.	.	.	L	G	K	F	L	P	G	L	Q	G	S	G	T	K	M	S	A	S	D	P
Template Known Secondary structure												G	G	G	T	T	B											T	T	T											T	T	T	T	T	.	.	.	.	.	.	S							.	.	.								T	T		T	T					S	S		G
Template Predicted Secondary structure																																														.	.	.	.	.	.								.	.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290							.	.	.	.	.	.	.				.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.			270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.
Query SS confidence																																																																						.	.
Query Sequence		N	R	N	N	V	I	G	L	L	E	D	P	K	S	V	V	K	K	I	K	R	A	V	T	D	S	D	E	P	P	V	V	R	Y	D	V	Q	N	K	A	G	V	S	N	L	L	D	I	L	S	A	V	T	G	Q	S	I	P	E	L	E	K	Q	F	E	G	K	M	.	.	Y	G	H	L	K	G	E	V	A	D
Query Conservation																																																																						.	.
Alig confidence			.	.																															.																		.																	.	.
Template Conservation			.	.																															.																		.
Template Sequence		N	.	.	S	A	I	Y	L	T	D	T	P	A	Q	I	K	N	K	I	N	R	Y	A	F	S	G	G	R	D	T	A	F	G	.	A	D	L	S	V	D	V	S	V	R	Y	L	E	V	F	M	K	.	D	D	A	E	L	E	K	L	K	A	D	Y	K	T	G	K	L	L	T	G	E	V	K	A	T	L	I	G
Template Known Secondary structure		G	.	.	G	S		B	T	T														S				S							.			T	T	T													.															T	S	S
Template Predicted Secondary structure			.	.																															.																		.
Template SS confidence
		318			.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.		.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	S	G	M	L	T	E	L	Q	E	R	Y	H	R	F	R	N	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	Q	G	L	I	K	E	H	A	E	R	R	D	K	V	D	T	T
Template Known Secondary structure															T	T
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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