Job Description P00954 Confidence 98.35% Date Thu Jan 5 10:57:18 GMT 2012 Rank 45 Aligned Residues 174 % Identity 20% Template c3afhA_ PDB info PDB header:ligase Chain: A: PDB Molecule:glutamyl-trna synthetase 2; PDBTitle: crystal structure of thermotoga maritima nondiscriminating glutamyl-2 trna synthetase in complex with a glutamyl-amp analog Resolution 2.00 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.								.	80	.	.	.
Predicted Secondary structure																					.																																																	.	.	.	.	.	.	.
Query SS confidence																					.																																																	.	.	.	.	.	.	.
Query Sequence		P	S	G	E	L	T	I	G	N	Y	M	G	A	L	R	Q	W	V	N	.	M	Q	D	D	Y	H	C	I	Y	C	I	V	D	Q	H	A	I	T	V	R	Q	D	A	Q	K	L	R	K	A	T	L	D	T	L	A	L	Y	L	A	C	G	I	D	P	E	K	S	T	.	.	.	.	.	.	.	I	F	V	Q	S
Query Conservation																					.																																																	.	.	.	.	.	.	.
Alig confidence																					.															.	.	.	.	.	.																													.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.
Template Sequence		P	T	G	H	L	H	V	G	G	A	R	T	A	L	F	N	W	M	F	A	R	K	E	G	G	K	F	I	L	R	I	E	D	T	.	.	.	.	.	.	D	T	E	R	S	S	R	E	Y	E	Q	Q	I	L	E	S	L	R	W	C	G	L	D	W	D	E	G	P	D	I	G	G	D	F	G	P	Y	R	Q	S
Template Known Secondary structure			S	S	S		B																		T							B				.	.	.	.	.	.		T	T	T																T	T				S	B	B	T	T	T	B		T	T				B	G	G
Template Predicted Secondary structure																																				.	.	.	.	.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.							.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	V	P	E	H	A	Q	L	G	W	A	L	N	C	Y	T	Y	F	G	E	L	S	R	M	T	Q	F	K	D	K	S	A	R	Y	A	E	N	I	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.
Template Sequence		E	R	L	E	.	.	I	Y	R	E	Y	A	E	K	L	V	E	D	K	R	A	Y	Y	V	V	Y	D	K	E	D	P	S	K	E	L	F	T	T	Y	E	Y	P	H	E	Y	K	E	K	G	H	P	V	T	I	K	F	K	V	L	P	G	K	T	S	F	E	D	L	L	K	G	Y	M	E	F	D	N	S	T	L
Template Known Secondary structure		G				.	.												T	T	S								S	S	S	T	T	S						S	S								T	T											S	S							T	T	T							G	G	G	S
Template Predicted Secondary structure						.	.
Template SS confidence
		107	.	.	110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
											124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	G	L	F	D	Y	P	V	L	M	A	A	D	I	L	L	Y	Q	T	N	L	V	P	V	G	E	D	Q	K	Q	H	L	E	L	S	R	D	I	A	Q	R	F	N	A	L	Y	G	E	I	F	K	V	P	E	P	F	I	P	K	S	G	A	R	V	M	S	L	L	E	P	T	K
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	D	F	I	I	M	K	S	N	G	F	P	T	Y	N	F	A	V	V	V	D	D	H	L	M	R	I	S	H	V	F	R	G	E	D	H	L	S	N	T	P	K	Q	L	M	I	Y	E	A	F	G	W	E	A	P	V	F	M	H	I	P	L	I	L	.	.	.	.	.	.	.	.	.	.	.	G	S	D	R	T
Template Known Secondary structure									T	T	S		B													T	T		S						G	G	G	G	G	G												T														.	.	.	.	.	.	.	.	.	.	.		T	T	S	S
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.												.	250	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	M	S	K	S	D	D	N	R	N	N	V	I
Query Conservation
Alig confidence							.	.	.
Template Conservation							.	.	.
Template Sequence		P	L	S	K	R	.	.	.	H	G	A	T	S
Template Known Secondary structure		B			T	T	.	.	.	T	S			B
Template Predicted Secondary structure							.	.	.
Template SS confidence
		254	.	.	.	.				.	260	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions