Job Description P00954 Confidence 100.00% Date Thu Jan 5 10:57:18 GMT 2012 Rank 5 Aligned Residues 324 % Identity 40% Template c2yy5C_ PDB info PDB header:ligase Chain: C: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from mycoplasma2 pneumoniae Resolution 2.55 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	V	F	S	G	A	Q	P	S	G	E	L	T	I	G	N	Y	M	G	A	L	R	Q	W	V	N	M	Q	D	D	Y	H	C	I	Y	C	I	V	D	Q	H	A	I	T	V	R	Q	D	A	Q	K	L	R	K	A	T	L	D	T	L	A	L	Y	L	A	C	G	I	D	P	E	K	S	T	I	F	V	Q	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	R	A	L	T	G	I	Q	A	S	G	K	Q	H	L	G	N	Y	L	G	V	M	Q	S	L	I	E	L	Q	E	Q	C	Q	L	F	V	F	V	A	D	L	H	S	I	T	V	D	F	Q	P	Q	A	L	K	Q	N	N	F	D	L	V	R	T	L	L	A	V	G	L	D	P	Q	K	A	C	L	F	L	Q	S
Template Known Secondary structure												T	T		B							T	T	T	T								S												T	T	S																					T	T			T	T	T						G	G
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	P	E	H	A	Q	L	G	W	A	L	N	C	Y	T	Y	F	G	E	L	S	R	M	T	Q	F	K	D	K	S	A	R	Y	A	E	N	I	N	A	G	L	F	D	Y	P	V	L	M	A	A	D	I	L	L	Y	Q	T	N	L	V	P	V	G	E	D	Q	K	Q	H	L	E	L	S	R	D	I	A	Q	R
Query Conservation
Alig confidence																														.	.	.
Template Conservation																														.	.	.
Template Sequence		D	L	L	E	H	S	M	M	G	Y	L	M	M	V	Q	S	N	L	G	E	L	Q	R	M	T	Q	F	K	.	.	.	A	K	K	A	L	N	I	P	T	G	L	L	T	Y	P	A	L	M	A	G	D	I	L	L	Y	Q	P	D	I	V	P	V	G	N	D	Q	K	Q	H	L	E	L	T	R	D	L	A	Q	R
Template Known Secondary structure		G		T												T	S													.	.	.	G	G	G						T															T	T			S						G	G	G
Template Predicted Secondary structure																														.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110				.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	A	L	Y	G	E	I	F	K	V	P	E	P	F	I	P	K	S	G	A	R	V	M	S	L	L	E	P	T	K	K	M	S	K	S	D	D	N	R	N	N	V	I	G	L	L	E	D	P	K	S	V	V	K	K	I	K	R	A	V	T	D	S	D	E	P	P	V	V	R	Y	D	V	Q	N	K	A	G	V
Query Conservation
Alig confidence																																																																					.	.
Template Conservation																																																																					.	.
Template Sequence		I	Q	K	K	F	K	L	K	L	R	L	P	Q	F	V	Q	N	K	D	T	N	R	I	M	D	L	F	D	P	T	K	K	M	S	K	S	S	K	N	Q	N	G	V	I	Y	L	D	D	P	K	E	V	V	V	K	K	I	R	Q	A	T	T	D	S	F	N	K	.	.	I	R	F	A	S	K	T	Q	P	G	V
Template Known Secondary structure																			T	T	T	T	T		B		S	S		T	T	S	B			T	T		S		G	G	G			B	T	T																	S	S			.	.		S			T	T	T
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.										.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.
Query Sequence		S	N	L	L	D	I	L	S	A	V	T	G	Q	S	I	P	E	L	.	.	.	.	.	.	.	.	.	E	K	Q	F	E	G	K	M	Y	G	H	L	K	G	E	V	A	D	A	V	S	G	M	L	T	E	L	Q	E	R	Y	H	R	F	R	N	D	E	A	F	L	Q	Q	V	M	K	D	G	A	E	K	A	S
Query Conservation																				.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.																																			.	.
Template Conservation																																																															.	.
Template Sequence		T	N	M	L	T	I	L	K	A	L	L	K	E	P	V	N	Q	S	L	T	N	Q	L	G	N	D	L	E	A	Y	F	S	T	K	S	Y	L	D	L	K	N	A	L	T	E	A	T	V	N	L	L	V	N	I	Q	R	K	R	E	Q	I	.	.	S	R	E	Q	V	F	N	C	L	Q	A	G	K	N	Q	A	Q
Template Known Secondary structure												T	T	S	G	G	G									S						T	T	S																											T	S	.	.
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.			.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	A	S	R	T	L	K	A	V	Y	E	A	I	G	F	V	A	K	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	A	R	T	T	L	A	L	F	Y	D	G	F	G	L	G	S	Q	N
Template Known Secondary structure																T		S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions