Job Description P00954 Confidence 98.69% Date Thu Jan 5 10:57:18 GMT 2012 Rank 40 Aligned Residues 196 % Identity 19% Template c2x1lC_ PDB info PDB header:ligase Chain: C: PDB Molecule:methionyl-trna synthetase; PDBTitle: crystal structure of mycobacterium smegmatis methionyl-trna2 synthetase in complex with methionine and adenosine Resolution 2.30 Å

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		2	.	.	.		.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.				.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.		.	.	.	.	.									.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure						.						.																	.	.	.								.										.						.	.	.	.	.	.	.	.
Query SS confidence						.						.																	.	.	.								.										.						.	.	.	.	.	.	.	.
Query Sequence		T	K	P	I	.	V	F	S	G	A	.	Q	P	S	G	E	L	T	I	G	N	Y	M	G	A	L	R	.	.	.	Q	W	V	N	M	Q	D	.	D	Y	H	C	I	Y	C	I	V	.	D	Q	H	A	I	.	.	.	.	.	.	.	.	T	V	R	Q	D	A	Q	K	L	R	K	A	T	L	D	T	L	A	L
Query Conservation						.						.																	.	.	.								.										.						.	.	.	.	.	.	.	.
Alig confidence						.						.																	.	.	.								.										.						.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	E	P	F	Y	I	T	T	A	I	A	Y	P	N	G	V	P	H	I	G	H	A	Y	E	Y	I	A	T	D	A	I	A	R	F	K	R	L	D	G	Y	D	V	R	Y	L	T	G	T	D	V	H	G	Q	K	M	A	E	T	A	A	K	E	G	I	P	A	A	E	L	A	R	R	N	S	D	V	F	Q	R	L
Template Known Secondary structure												B			S	S																							T	T													S											T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		67	.	.	70	.	.	.	.	.	.	.	.																																			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	L	A	C	G	I	D	P	E	K	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	F	V	Q	S	H	V	P	E	H	A	Q	L	G	W	A	L	N	C	Y	T	Y	F	G	E	L	S	R	M	T	Q	F	K	D
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	E	K	L	N	I	S	F	D	R	F	I	R	T	S	D	A	D	H	Y	E	A	S	K	A	I	W	K	R	M	A	D	A	G	D	I	Y	L	D	A	Y	T	E	E	Q	T	Y	F	F	R	L	S	A	Y	T	D	R	L	L	A	L	Y	E	E	H	P	E	F	I	G	P	D	A	R	R	N	E	I	V	S
Template Known Secondary structure					T	T				S					T	T	S																	T	T																	G	G	G	S												G	G	G			S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		113	.	.	.	.	.	.	120	.	.																															.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.													.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.													.
Query Sequence		K	S	A	R	Y	A	E	N	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	L	F	D	Y	P	V	L	M	A	A	D	I	L	L	.	Y	Q	T	N	L	V	P	V	G	E	D	Q	.	K	Q	H	L	E	L	S	R	D	I
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.													.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.													.
Template Conservation
Template Sequence		F	V	S	G	G	L	K	D	L	S	I	S	R	T	T	F	D	W	G	V	P	V	P	D	H	P	D	H	V	M	Y	V	W	V	D	A	L	T	N	Y	L	T	G	V	G	F	P	D	T	E	S	E	S	F	R	R	Y	W	P	A	D	L	H	M	I	G	K	D	I	I	R	F	H	T	V	Y	W	P	A	F
Template Known Secondary structure				T	T										S	S				S				T	T														T					T	T	T	T	T		T	T	S								S		S						G	G	G						T
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	R	F	N	A	L	Y	G	E	I	F	K	V	P	E	P	F	I	P	K	S	G	A	R	V	M	S	L	L	E	P	T	K	K	M	S	K	S	D	D	N	R	N	N	V	I	G	L	L	E
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Sequence		L	M	S	A	G	L	P	L	P	K	R	I	F	A	H	G	W	L	.	.	.	.	.	.	.	.	.	.	.	L	N	R	G	E	K	M	S	K	S	.	.	.	I	G	N	V	V	D	P	V	N
Template Known Secondary structure						T					S									.	.	.	.	.	.	.	.	.	.	.				S		S			T	T	.	.	.	T			S	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.												.	.	.	.	300	.	.	.	.	.				.	.	.	.	310	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions