Job Description P00954 Confidence 100.00% Date Thu Jan 5 10:57:18 GMT 2012 Rank 28 Aligned Residues 268 % Identity 15% Template c2ts1A_ PDB info PDB header:ligase (synthetase) Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: structure of tyrosyl-t/rna synthetase refined at 2.3 angstroms2 resolution. interaction of the enzyme with the tyrosyl adenylate3 intermediate Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.											.	.	.	.	.	.	.	.	60				.	.	.	.	.	.	.
Predicted Secondary structure																.																																					.	.	.	.	.	.	.	.	.	.										.	.	.
Query SS confidence																.																																					.	.	.	.	.	.	.	.	.	.										.	.	.
Query Sequence		T	K	P	I	V	F	S	G	A	Q	P	S	G	E	.	L	T	I	G	N	Y	M	G	A	L	R	Q	W	V	N	M	Q	D	D	Y	H	C	I	Y	C	I	V	D	Q	H	A	I	T	V	R	Q	.	.	.	.	.	.	.	.	.	.	D	A	Q	K	L	R	K	A	T	.	.	.	L	D	T	L	A	L	Y
Query Conservation																.																																					.	.	.	.	.	.	.	.	.	.										.	.	.
Alig confidence																.																																					.	.	.	.	.	.	.	.	.	.										.	.	.
Template Conservation
Template Sequence		E	R	V	T	L	Y	C	G	F	D	P	T	A	D	S	L	H	I	G	H	L	A	T	I	L	T	M	R	R	F	Q	Q	A	G	H	R	P	I	A	L	V	G	G	A	T	G	L	I	G	D	P	S	G	K	K	S	E	R	T	L	N	A	K	E	T	V	E	A	W	S	A	R	I	K	E	Q	L	G	R	F
Template Known Secondary structure		S											S	S	S	S		B	G	G	G													T	T									T	T	G	G	G	T				T	T		S	S																						T	T	S
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.					140	.	.	.
Predicted Secondary structure																																																																										.	.	.	.
Query SS confidence																																																																										.	.	.	.
Query Sequence		L	A	C	G	I	D	P	E	K	S	T	I	F	V	Q	S	H	V	P	E	H	A	Q	L	G	W	A	L	N	C	Y	T	Y	F	G	E	L	S	R	M	T	Q	F	K	D	K	S	A	R	Y	A	E	N	I	N	A	G	L	F	D	Y	P	V	L	M	A	A	D	I	L	L	Y	.	.	.	.	Q	T	N	L
Query Conservation																																																																										.	.	.	.
Alig confidence																																																																										.	.	.	.
Template Conservation
Template Sequence		L	D	F	E	A	D	G	N	P	A	K	I	K	N	N	Y	D	W	I	G	P	L	D	V	I	T	F	L	R	D	V	G	K	H	F	S	V	N	Y	M	M	A	K	E	S	V	Q	S	R	I	E	T	G	I	S	F	T	E	F	S	Y	M	M	L	Q	A	Y	D	F	L	R	L	Y	E	T	E	G	C	R	L
Template Known Secondary structure		S		S	S		S	S	S							T					T	T										T	G	G	G								T	S					T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	V	G	E	D	Q	K	Q	H	L	E	L	S	R	D	I	A	Q	R	F	N	A	L	Y	G	E	I	F	K	V	P	E	P	F	I	P	K	S	G	A	R	V	M	S	L	L	E	P	T	K	K	M	S	K	S	D	D	N	R	N	N	V	I	G	L	L	E	D	P	K	S	V	V	K	K	I	K	R	A
Query Conservation
Alig confidence																								.	.	.	.	.	.	.							.	.	.									.	.
Template Conservation																								.	.	.	.	.	.	.							.	.	.									.	.
Template Sequence		Q	I	G	G	S	D	Q	W	G	N	I	T	A	G	L	E	L	I	R	K	T	K	.	.	.	.	.	.	.	G	R	A	F	G	L	.	.	.	T	I	P	L	V	T	K	A	.	.	D	G	T	K	F	G	K	T	E	S	G	T	I	W	L	D	K	E	K	T	S	P	Y	E	F	Y	Q	F	W	I	N	T
Template Known Secondary structure						G	G	G																.	.	.	.	.	.	.							.	.	.								T	.	.	T	S			T	T			S	S				B	S	S	T	T	T	S											T
Template Predicted Secondary structure																								.	.	.	.	.	.	.							.	.	.									.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210								.	.	.	.	.	.				.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		V	T	D	S	D	E	P	P	V	V	R	Y	D	V	Q	N	K	A	G	V	S	N	L	L	D	I	L	S	A	V	T	G	Q	S	I	P	E	L	E	K	Q	F	.	E	G	K	M	Y	G	H	L	K	G	E	V	A	D	A	V	S	G	M	L	T	E	L	Q	E	R	Y	H	R	F	R
Query Conservation																																												.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	R	D	V	I	R	Y	L	K	Y	F	T	F	L	S	K	E	E	I	E	A	L	E	Q	E	L	R	E	A	P	E	K	R	A	A	Q	K	T	L	A	E	E	V	T	K	L	V	H	G	E	E	A	L	R	Q	A	I	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions