Job Description P00954 Confidence 100.00% Date Thu Jan 5 10:57:18 GMT 2012 Rank 34 Aligned Residues 278 % Identity 15% Template c2rkjM_ PDB info PDB header:ligase/rna Chain: M: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: cocrystal structure of a tyrosyl-trna synthetase splicing2 factor with a group i intron rna Resolution 4.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.											.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																.																																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																.																																							.	.	.	.	.	.	.	.	.	.
Query Sequence		T	K	P	I	V	F	S	G	A	Q	P	S	G	E	.	L	T	I	G	N	Y	M	G	A	L	R	Q	W	V	N	M	Q	D	D	Y	H	C	I	Y	C	I	V	D	Q	H	A	I	T	V	R	Q	D	A	.	.	.	.	.	.	.	.	.	.	Q	K	L	R	K	A	T	L	D	T	L	A	L	Y	L	A	C
Query Conservation																.																																							.	.	.	.	.	.	.	.	.	.
Alig confidence																.																																							.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	R	I	G	A	Y	V	G	I	D	P	T	A	P	S	L	H	V	G	H	L	L	P	L	M	P	L	F	W	M	Y	L	E	G	Y	K	A	F	T	L	I	G	G	S	T	A	K	I	G	D	P	T	G	D	A	T	M	N	M	T	K	I	H	Y	Q	L	K	K	L	W	E	N	V	D	T	Q	M	R	A	R
Template Known Secondary structure		S										T	T	S	S	S		B	G	G	G														T									T	T	G	G	G	T																																T
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		71	.				.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.					140	.
Predicted Secondary structure				.	.	.																																													.	.																								.	.	.	.
Query SS confidence				.	.	.																																													.	.																								.	.	.	.
Query Sequence		G	I	.	.	.	D	P	E	K	S	T	I	F	V	Q	S	H	V	P	E	H	A	Q	L	G	W	A	L	N	C	Y	T	Y	F	G	E	L	S	R	M	T	Q	F	K	D	K	S	A	R	.	.	Y	A	E	N	I	N	A	G	L	F	D	Y	P	V	L	M	A	A	D	I	L	L	Y	.	.	.	.	Q	T
Query Conservation				.	.	.																																													.	.																								.	.	.	.
Alig confidence				.	.	.																																													.	.																								.	.	.	.
Template Conservation
Template Sequence		G	Y	E	A	D	W	A	R	K	R	G	I	V	N	N	N	H	W	W	N	K	Q	P	M	L	E	V	L	R	R	V	G	H	A	L	R	I	G	P	M	L	S	R	D	T	V	K	N	K	M	T	Q	G	D	G	V	S	F	A	E	F	T	Y	P	I	M	Q	G	W	D	W	F	E	L	F	Y	Q	Q	G	V
Template Known Secondary structure		T					S	S		B						T					T	T										T	T	T	T			S					T										T	S	S
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.							.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.				.
Predicted Secondary structure																																																					.	.	.	.	.	.																				.	.	.
Query SS confidence																																																					.	.	.	.	.	.																				.	.	.
Query Sequence		N	L	V	P	V	G	E	D	Q	K	Q	H	L	E	L	S	R	D	I	A	Q	R	F	N	A	L	Y	G	E	I	F	K	V	P	E	P	F	I	P	K	S	G	A	R	V	M	S	L	L	E	P	.	.	.	.	.	.	T	K	K	M	S	K	S	D	D	N	R	N	N	V	I	G	L	L	E	.	.	.	D
Query Conservation																																																					.	.	.	.	.	.																				.	.	.
Alig confidence																																																					.	.	.	.	.	.								.	.	.										.	.	.
Template Conservation																																																																		.	.	.
Template Sequence		Q	M	Q	I	G	G	S	D	Q	Y	G	N	I	I	S	G	L	E	V	V	K	A	A	R	E	S	E	P	D	P	Q	E	R	K	Y	V	T	P	K	T	A	L	D	E	C	V	G	F	T	V	P	L	L	T	D	S	S	G	A	K	F	G	K	S	.	.	.	A	G	N	A	I	W	L	D	P	Y	Q	T	S
Template Known Secondary structure								G	G	G																	T											S			S	T	T												B		S	S	S	S	B	T	T			.	.	.	T	T				B	S		G	G	G	S
Template Predicted Secondary structure																																																																		.	.	.
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.				.	330	.	.	.	.	.	.	.	.	.	340	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		P	K	S	V	V	K	K	I	K	R	A	V	T	D	S	D	E	P	P	V	V	R	Y	D	V	Q	N	K	A	G	V	S	N	L	L	D	I	L	S	A	V	T	G	Q	S	I	P	E	L	E	K	Q	F	E	G	K	M	Y	.	G	H	L	K	G	E	V	A	D	A	V	S	G	M	L	T	E	L	Q	E	R
Query Conservation																																																												.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	F	D	F	Y	G	Y	F	V	R	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	Q	E	V	E	N	L	L	K	L	F	T	F	M	P	I	S	E	I	T	K	T	M	E	E	H	I	K	D	P	S	K	R	V	A	Q	H	T	L	A	R	E	V	V	T	L	V	H	G	K	Q	E	A
Template Known Secondary structure												S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												T	T		T	T	T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.																.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
		292	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	H	R	F	R	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	A	E	D	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		407	.	.	410	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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