Job Description P00954 Confidence 100.00% Date Thu Jan 5 10:57:18 GMT 2012 Rank 38 Aligned Residues 259 % Identity 15% Template c2pidB_ PDB info PDB header:ligase Chain: B: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: crystal structure of human mitochondrial tyrosyl-trna synthetase in2 complex with an adenylate analog Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.																					.	.	.	.	.	.	.	60
Predicted Secondary structure																.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	K	P	I	V	F	S	G	A	Q	P	S	G	E	.	L	T	I	G	N	Y	M	G	A	L	R	Q	W	V	N	M	Q	D	D	Y	H	C	I	Y	C	I	V	D	Q	H	A	I	T	V	R	Q	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	K	L	R	K	A	T
Query Conservation																.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	P	Q	T	I	Y	C	G	F	D	P	T	A	D	S	L	H	V	G	H	L	L	A	L	L	G	L	F	H	L	Q	R	A	G	H	N	V	I	A	L	V	G	G	A	T	A	R	L	G	D	P	S	G	R	T	K	E	R	E	A	L	E	T	E	R	V	R	A	N	A	R	A	L	R	L	G	L	E	A	L
Template Known Secondary structure			S										S	S	S	S		B																T	T									T	T	G	G	G	T				T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		L	D	T	L	A	L	Y	L	A	C	G	I	D	P	E	K	S	T	I	F	V	Q	S	H	V	P	E	H	A	Q	L	G	W	A	L	N	C	Y	T	Y	F	G	E	L	S	R	M	T	Q	F	K	D	K	S	A	R	Y	A	E	.	.	N	I	N	A	G	L	F	D	Y	P	V	L	M	A	A	D	I	L	L
Query Conservation																																																													.	.
Alig confidence																																																													.	.
Template Conservation
Template Sequence		A	A	N	H	Q	Q	L	F	T	D	G	R	S	W	G	S	F	T	V	L	D	N	S	A	W	Y	Q	K	Q	H	L	V	D	F	L	A	A	V	G	G	H	F	R	M	G	T	L	L	S	R	Q	S	V	Q	L	R	L	K	S	P	E	G	M	S	L	A	E	F	F	Y	Q	V	L	Q	A	Y	D	F	Y	Y
Template Known Secondary structure												S	S										T					T	T											T	T	T	S																	S	T	T
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		139					140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure			.	.	.	.
Query SS confidence			.	.	.	.
Query Sequence		Y	.	.	.	.	Q	T	N	L	V	P	V	G	E	D	Q	K	Q	H	L	E	L	S	R	D	I	A	Q	R	F	N	A	L	Y	G	E	I	F	K	V	P	E	P	F	I	P	K	S	G	A	R	V	M	S	L	L	E	P	T	K	K	M	S	K	S	D	D	N	R	N	N	V	I	G	L	L	E	D	P	K
Query Conservation			.	.	.	.
Alig confidence			.	.	.	.																																					.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	F	Q	R	Y	G	C	R	V	Q	L	G	G	S	D	Q	L	G	N	I	M	S	G	Y	E	F	I	N	K	L	T	G	E	D	V	F	G	I	T	V	P	.	.	.	.	.	.	.	.	.	.	L	I	T	A	V	W	L	N	R	D	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	F
Template Known Secondary structure															G	G	G																										.	.	.	.	.	.	.	.	.	.						B	S	S	T	T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.											.	.	.	.	.	.	.	280	.	.	.	.															.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		S	V	V	K	K	I	K	R	A	V	T	D	S	D	E	P	P	V	V	R	Y	D	V	Q	N	K	A	G	V	S	N	L	L	D	I	L	S	A	V	T	G	Q	S	I	P	E	L	E	K	Q	F	E	G	K	M	.	Y	G	H	L	K	G	E	V	A	D	A	V	S	G	M	L	T	E	L	Q	E	R	Y	H
Query Conservation																																																									.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.																			.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.
Template Sequence		E	L	Y	Q	F	F	V	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	D	S	V	E	R	Y	L	K	L	F	T	F	L	P	L	P	E	I	D	H	I	M	Q	L	H	V	K	E	P	E	R	R	G	P	Q	K	R	L	A	A	E	V	T	K	L	V	H	G	.	.	.	.	.	.
Template Known Secondary structure									T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															G	G	G																		.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.																310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	R	N	D	E	A	F	L	Q	Q	V	M	K	D	G	A	E	K	A	S	A	H	A	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	G	L	D	S	A	K	R	C	T	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															360	.	.	.	.	.	.	.	.	.	370	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions