Job Description P00954 Confidence 98.10% Date Thu Jan 5 10:57:18 GMT 2012 Rank 51 Aligned Residues 266 % Identity 17% Template c2o5rA_ PDB info PDB header:ligase Chain: A: PDB Molecule:glutamyl-trna synthetase 1; PDBTitle: crystal structure of glutamyl-trna synthetase 1 (ec 6.1.1.17)2 (glutamate-trna ligase 1) (glurs 1) (tm1351) from thermotoga maritima3 at 2.5 a resolution Resolution 2.34 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.								.	.	80	.	.	.
Predicted Secondary structure																								.																																													.	.	.	.	.	.	.
Query SS confidence																								.																																													.	.	.	.	.	.	.
Query Sequence		P	S	G	E	L	T	I	G	N	Y	M	G	A	L	R	Q	W	V	N	M	Q	D	.	D	Y	H	C	I	Y	C	I	V	D	Q	H	A	I	T	V	R	Q	D	A	Q	K	L	R	K	A	T	L	D	T	L	A	L	Y	L	A	C	G	I	D	P	E	K	S	.	.	.	.	.	.	.	T	I	F	V	Q	S
Query Conservation																								.																																													.	.	.	.	.	.	.
Alig confidence																								.															.	.	.	.	.	.																									.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.
Template Sequence		P	T	G	F	L	H	V	G	G	A	R	T	A	L	F	N	F	L	F	A	R	K	E	K	G	K	F	I	L	R	I	E	D	T	D	L	E	.	.	.	.	.	.	R	S	E	R	E	Y	E	E	K	L	X	E	S	L	R	W	L	G	L	L	W	D	E	G	P	D	V	G	G	D	H	G	P	Y	R	Q	S
Template Known Secondary structure				S			B																		T							B			S	S			.	.	.	.	.	.	S	G	G	G														T				S	B	B	T	T	T	B		T	T				B	G	G
Template Predicted Secondary structure																																							.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.							.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		84	.	.	.	.	.	90	.	.	.	.									.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	V	P	E	H	A	Q	L	G	W	A	.	.	.	.	.	.	.	.	L	N	C	Y	T	Y	F	G	E	L	S	R	M	T	Q	F	K	D	K	S	A	R	Y	A	E	N	I	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation													.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	R	V	E	I	Y	R	E	H	A	E	R	L	V	K	E	G	K	A	Y	Y	V	Y	A	Y	P	E	E	I	E	E	X	R	E	K	L	L	S	E	G	K	A	P	H	Y	S	Q	E	X	F	E	K	F	D	T	P	E	R	R	R	E	Y	E	E	K	G	L	R	P	A	V	F	F	K	X	P	R	K	D	Y
Template Known Secondary structure		G	G														T	T	S								S	T	T	T										T	T					B		G	G	G	G	T	T	T												T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
																												124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	F	D	Y	P	V	L	M	A	A	D	I	L	L	Y	Q	T	N	L	V	P	V	G	E	D	Q	K	Q	H	L	E	L	S	R	D	I	A	Q	R	F	N	A	L	Y	G	E	I	F	K	V	P	E	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.
Template Conservation																																																																																.	.
Template Sequence		V	L	N	D	V	V	K	G	E	V	V	F	K	T	G	A	I	G	D	F	V	I	X	R	S	N	G	L	P	T	Y	N	F	A	C	V	V	D	D	X	L	X	E	I	T	H	V	I	R	G	D	D	H	L	S	N	T	L	R	Q	L	A	L	Y	E	A	F	E	K	A	P	P	V	F	A	H	V	S	.	.
Template Known Secondary structure						T	T	T							T	T	S	S		B						T	T	S		B													T	T		S						G	G	G														T	T											.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.						.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																																				.	.	.	.	.
Query SS confidence																																				.	.	.	.	.
Query Sequence		F	I	P	K	S	G	A	R	V	M	S	L	L	E	P	T	K	K	M	S	K	S	D	D	N	R	N	N	V	I	G	L	L	E	.	.	.	.	.	D	P	K	S	V	V	K	K	I	K	R	A	V	T	D	S	D	E	P	P	V	V	R	Y	D	V	Q	N	K	A	G	V	S	N	L	L	D	I	L	S	A
Query Conservation																																				.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.			.												.	.	.										.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.			.												.	.	.																											.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	T	I	.	L	G	P	D	G	K	K	L	S	K	R	.	.	.	H	G	A	T	S	V	E	A	F	R	D	X	G	Y	L	P	E	A	L	V	N	Y	L	A	L	L	.	.	.	.	.	.	.	.	.	.	G	W	S	H	P	E	G	K	E	L	L	T	L	E	E	L	I	S	S
Template Known Secondary structure		.	.	.	.	.	.	.	.			.			T	T	S	S	B			G	G	.	.	.	G	S			B								T												T	S	.	.	.	.	.	.	.	.	.	.	S	B			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.			.												.	.	.																											.	.	.	.	.	.	.	.	.	.
Template SS confidence
										242	.		.	.	.	.	.	.	250	.	.	.	.				.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280											.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270						.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.
Query SS confidence																				.	.	.	.	.
Query Sequence		V	T	G	Q	S	I	P	E	L	E	K	Q	F	E	G	K	M	Y	.	.	.	.	.	G	H	L	K	G	E	V	A	D	A	V	S	G	M	L	T	E	L	Q	E	R	Y	H	R	F	R	N	D	E	A	F	L	Q	Q	V	M	K
Query Conservation																				.	.	.	.	.
Alig confidence																				.	.	.	.	.
Template Conservation
Template Sequence		F	S	L	D	R	L	S	P	N	P	A	I	F	D	P	Q	K	L	K	W	X	N	G	Y	Y	L	R	N	X	P	I	E	K	L	A	E	L	A	K	P	F	F	E	K	A	G	I	K	I	I	D	E	E	Y	F	K	K	V	L	E
Template Known Secondary structure				G	G	G	B		S	S																				S																T	T
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions