Job Description P00954 Confidence 100.00% Date Thu Jan 5 10:57:18 GMT 2012 Rank 19 Aligned Residues 274 % Identity 22% Template c2j5bA_ PDB info PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: structure of the tyrosyl trna synthetase from acanthamoeba2 polyphaga mimivirus complexed with tyrosynol Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.				.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																		.																			.	.	.
Query SS confidence																																		.																			.	.	.
Query Sequence		T	K	P	I	V	F	S	G	A	Q	P	S	G	E	L	T	I	G	N	Y	M	G	A	L	R	Q	W	V	N	M	Q	D	.	D	Y	H	C	I	Y	C	I	V	D	Q	H	A	I	T	V	R	Q	.	.	.	D	A	Q	K	L	R	K	A	T	L	D	T	L	A	L	Y	L	A	C	G	I	D	P	E	K	S
Query Conservation																																		.																			.	.	.
Alig confidence																																		.																			.	.	.
Template Conservation
Template Sequence		R	I	F	T	A	Y	N	G	F	E	P	S	G	R	I	H	I	A	Q	A	L	I	T	V	M	N	T	N	N	M	I	E	C	G	G	Q	M	I	I	Y	I	A	D	W	F	A	K	M	N	L	K	M	N	G	D	I	N	K	I	R	E	L	G	R	Y	F	I	E	V	F	K	A	C	G	I	N	L	D	G	T
Template Known Secondary structure														S	S		B																	T	T															T	T	G	G	G	G																			T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																		.																																															.	.	.
Query SS confidence																		.																																															.	.	.
Query Sequence		T	I	F	V	Q	S	H	V	P	E	H	A	Q	L	G	W	.	A	L	N	C	Y	T	Y	F	G	E	L	S	R	M	T	Q	F	K	D	K	S	A	R	Y	A	E	N	I	N	A	G	L	F	D	Y	P	V	L	M	A	A	D	I	L	L	Y	.	.	.	Q	T	N	L	V	P	V	G	E	D	Q	K	Q	H
Query Conservation																		.																																															.	.	.
Alig confidence																		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	F	I	W	A	S	E	F	I	A	S	N	P	S	Y	I	E	R	M	L	D	I	A	E	F	S	T	I	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	R	I	F	Y	P	C	M	Q	A	A	D	V	F	E	L	V	P	E	G	I	D	I	C	Q	L	G	I	D	Q	R	K	V
Template Known Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T															S	S	T	T			S					B	G	G	G
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.																	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	L	S	R	D	I	A	Q	R	F	N	A	L	Y	G	E	I	F	K	V	P	E	P	F	I	P	K	S	G	A	R	V	M	S	L	L	E	P	T	K	K	M	S	K	S	D	D	N	R	N	N	V	I	G	L	L	E	D	P	K	S	V	V	K	K	I	K	R	A	V	T	D	S	D	E	P	P	V	V
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.																			.	.																												.	.
Template Conservation																								.	.	.	.	.	.	.	.	.																			.	.																												.	.
Template Sequence		N	M	L	A	I	E	Y	A	N	D	R	G	L	K	I	P	I	S	L	S	H	H	.	.	.	.	.	.	.	.	.	M	L	M	S	L	S	G	P	K	K	K	M	S	K	S	D	P	Q	.	.	G	A	I	F	M	D	D	T	E	Q	E	V	S	E	K	I	S	R	A	Y	C	T	D	E	T	F	D	.	.
Template Known Secondary structure												T	T									B		.	.	.	.	.	.	.	.	.					T	T		S	S				S	T	T		G	G	.	.	G	S		B	T	T													S				S	S	S	T	T	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.																			.	.																												.	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.										.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.						.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.
Query SS confidence																						.	.	.	.	.
Query Sequence		R	Y	D	V	Q	N	K	A	G	V	S	N	L	L	D	I	L	S	A	V	.	.	.	.	.	T	G	Q	S	I	P	E	L	E	K	Q	F	E	G	K	M	Y	G	H	L	K	G	E	V	A	D	A	V	S	G	M	L	T	E	L	Q	E	R	Y	H	R	F	R	N	D	E	A	F	L	Q	Q	V	M	K
Query Conservation																						.	.	.	.	.
Alig confidence		.	.																			.	.	.	.	.																																										.
Template Conservation		.	.																																																																	.
Template Sequence		.	.	N	P	I	F	E	Y	I	K	Y	L	L	L	R	W	F	G	T	L	N	L	C	G	K	I	Y	T	D	I	E	S	I	Q	E	D	F	S	S	M	N	K	R	E	L	K	T	D	V	A	N	Y	I	N	T	I	I	D	L	V	R	E	H	F	K	K	.	P	E	L	S	E	L	L	S	N	V	K	S
Template Known Secondary structure		.	.										T						S					T	T				S	S									T	T	S																								T	T	S	.	G	G	G
Template Predicted Secondary structure		.	.																																																																	.
Template SS confidence
				257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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