Job Description P00954 Confidence 100.00% Date Thu Jan 5 10:57:18 GMT 2012 Rank 24 Aligned Residues 292 % Identity 15% Template c2ip1A_ PDB info PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure analysis of s. cerevisiae tryptophanyl trna2 synthetase Resolution 1.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure															.																				.																			.	.
Query SS confidence															.																				.																			.	.
Query Sequence		T	K	P	I	V	F	S	G	A	Q	P	S	G	.	E	L	T	I	G	N	Y	M	G	A	L	R	Q	W	V	N	M	Q	D	.	D	Y	H	C	I	Y	C	I	V	D	Q	H	A	I	T	V	R	Q	.	.	D	A	Q	K	L	R	K	A	T	L	D	T	L	A	L	Y	L	A	C	G	I	D	P	E	K	S
Query Conservation															.																				.																			.	.
Alig confidence															.																				.																			.	.
Template Conservation
Template Sequence		K	P	F	F	L	Y	T	G	R	G	P	S	S	D	S	M	H	L	G	H	M	I	P	F	V	F	T	K	W	L	Q	E	V	F	D	V	P	L	V	I	E	L	T	D	D	E	K	F	L	F	K	H	K	L	T	I	N	D	V	K	N	F	A	R	E	N	A	K	D	I	I	A	V	G	F	D	P	K	N	T
Template Known Secondary structure														S	S			B	G	G	G															T																	T	T																			T	T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		78	.	80	.	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.												.	.
Predicted Secondary structure										.	.																																																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.																																																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	I	F	V	Q	S	H	V	.	.	P	E	H	A	Q	L	G	W	A	L	N	C	Y	T	Y	F	G	E	L	S	R	M	T	Q	F	K	D	K	S	A	R	Y	A	E	N	I	N	A	G	L	F	D	Y	P	V	L	M	A	A	D	I	L	L	Y	Q	T	N	.	.	.	.	.	.	.	.	.	.	.	L	V
Query Conservation										.	.																																																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.																							.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.
Template Sequence		F	I	F	S	D	L	Q	Y	M	G	G	A	F	Y	E	T	V	V	R	V	S	R	Q	I	T	G	S	T	A	K	A	V	.	.	.	.	.	.	.	F	G	F	N	D	S	D	C	I	G	K	F	H	F	A	S	I	Q	I	A	T	A	F	P	S	S	F	P	N	V	L	G	L	P	D	K	T	P	C	L	I
Template Known Secondary structure											S												T	S									T	.	.	.	.	.	.	.	T				T	T	S							T							T	T	S	G	G	G		T	T	T	T				T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.								.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		P	V	G	E	D	Q	K	Q	H	L	E	L	S	R	D	I	A	Q	R	F	N	A	L	Y	G	E	I	F	K	V	P	E	P	F	I	P	K	S	G	A	R	V	M	S	L	L	E	P	T	K	K	M	S	K	S	D	D	N	R	N	N	V	I	G	L	L	E	D	P	K	S	V	V	K	K	I	K	R	.	A
Query Conservation																																																																																.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.									.					.	.	.	.	.	.	.	.																	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.									.					.	.	.	.	.	.	.	.
Template Sequence		P	C	A	I	D	Q	D	P	Y	F	R	V	C	R	D	V	A	D	K	L	K	Y	S	K	P	A	L	L	H	S	R	.	.	.	.	.	.	.	.	.	.	F	F	P	A	L	Q	G	D	.	D	T	T	A	.	.	.	.	.	.	.	.	I	F	M	T	D	T	P	K	Q	I	Q	K	K	I	N	K	Y	A
Template Known Secondary structure					G	G	G															T	S										.	.	.	.	.	.	.	.	.	.					T	T			.	G	G	G		.	.	.	.	.	.	.	.		B	T	T														S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.									.					.	.	.	.	.	.	.	.
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.											.	.	340	.	.	.	.	.		.	.	.	.									350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.			.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.			270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.																	.	.																														.
Query SS confidence																																.	.																	.	.																														.
Query Sequence		V	T	D	S	D	E	P	P	V	V	R	Y	D	V	Q	N	K	A	G	V	S	N	L	L	D	I	L	S	A	V	.	.	T	G	Q	S	I	P	E	L	E	K	Q	F	E	G	K	M	.	.	Y	G	H	L	K	G	E	V	A	D	A	V	S	G	M	L	T	E	L	Q	E	R	Y	H	R	F	R	N	D	.
Query Conservation																																.	.																	.	.																														.
Alig confidence																																.	.																	.	.																														.
Template Conservation
Template Sequence		F	S	G	G	Q	V	S	A	D	L	H	R	E	L	G	G	N	P	D	V	D	V	A	Y	Q	Y	L	S	F	F	K	D	D	D	V	F	L	K	E	C	Y	D	K	Y	K	S	G	E	L	L	S	G	E	M	K	K	L	C	I	E	T	L	Q	E	F	V	K	A	F	Q	E	R	R	A	Q	V	D	E	E	T
Template Known Secondary structure					S		S	S											T	T	T																											T	S	S																										T
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
			299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	E	A	F	L	Q	Q	V	M	K	D	G	A	E	K	A	S	A	H	A	S	R
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		L	D	K	F	M	V	P	H	K	L	V	W	G	E	K	E	R	L	V	A	P	K
Template Known Secondary structure							S							S		S			S	S
Template Predicted Secondary structure
Template SS confidence
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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